miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 5' -56.7 NC_002794.1 + 124530 0.66 0.896368
Target:  5'- aGCCGCCGacGCUGGcGCU---GCGGCUg -3'
miRNA:   3'- -UGGCGGU--CGACCaUGAccuUGUCGAa -5'
10756 5' -56.7 NC_002794.1 + 94999 0.66 0.882809
Target:  5'- cGCCGCUuGCUGucGCugaUGGGGCGGCUg -3'
miRNA:   3'- -UGGCGGuCGACcaUG---ACCUUGUCGAa -5'
10756 5' -56.7 NC_002794.1 + 117975 0.66 0.882809
Target:  5'- gGCCaCCAGCUGGUgguacagcagggGCUGccGCGGCa- -3'
miRNA:   3'- -UGGcGGUCGACCA------------UGACcuUGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 108313 0.66 0.882809
Target:  5'- -gCGCCGGCggugGGUcUUGGAcgGCGGCg- -3'
miRNA:   3'- ugGCGGUCGa---CCAuGACCU--UGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 94030 0.66 0.878565
Target:  5'- uCCGCCggcgggcccgagagcGGCggcGGUGCgGGGGCGGCg- -3'
miRNA:   3'- uGGCGG---------------UCGa--CCAUGaCCUUGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 137987 0.66 0.875691
Target:  5'- cGCCGCagcGCUGGUgcaGCUGGGcgcGCAGgUa -3'
miRNA:   3'- -UGGCGgu-CGACCA---UGACCU---UGUCgAa -5'
10756 5' -56.7 NC_002794.1 + 42669 0.66 0.868355
Target:  5'- cGCCGCCGGCacggGGUACgccGaGAcCGGCg- -3'
miRNA:   3'- -UGGCGGUCGa---CCAUGa--C-CUuGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 194972 0.67 0.860806
Target:  5'- -aCGCCGGCUcGUACaGGcACAGCg- -3'
miRNA:   3'- ugGCGGUCGAcCAUGaCCuUGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 151210 0.67 0.853049
Target:  5'- cGCCGCCGGCUaccgGGUcUUGGGccAgGGCUa -3'
miRNA:   3'- -UGGCGGUCGA----CCAuGACCU--UgUCGAa -5'
10756 5' -56.7 NC_002794.1 + 39386 0.67 0.853049
Target:  5'- gUCGCUAGCccUGGgcuuCgGGAACAGCUUc -3'
miRNA:   3'- uGGCGGUCG--ACCau--GaCCUUGUCGAA- -5'
10756 5' -56.7 NC_002794.1 + 142216 0.67 0.845092
Target:  5'- -gCGgCAGCggcGGUGCggGGAGCGGCg- -3'
miRNA:   3'- ugGCgGUCGa--CCAUGa-CCUUGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 38127 0.67 0.845092
Target:  5'- -gCGCCAGCUGGgGCgUGGAGuCgAGCa- -3'
miRNA:   3'- ugGCGGUCGACCaUG-ACCUU-G-UCGaa -5'
10756 5' -56.7 NC_002794.1 + 150219 0.67 0.845092
Target:  5'- uGCUGCCgAGCUGcGUGCgacGGCAGCUg -3'
miRNA:   3'- -UGGCGG-UCGAC-CAUGaccUUGUCGAa -5'
10756 5' -56.7 NC_002794.1 + 118716 0.67 0.845092
Target:  5'- gAUgGCCAGCUGcgcGUACUGGGcGCuGCUc -3'
miRNA:   3'- -UGgCGGUCGAC---CAUGACCU-UGuCGAa -5'
10756 5' -56.7 NC_002794.1 + 42977 0.67 0.83694
Target:  5'- --gGCCAGCUGGUGCgccaGGAugcGCAgGCa- -3'
miRNA:   3'- uggCGGUCGACCAUGa---CCU---UGU-CGaa -5'
10756 5' -56.7 NC_002794.1 + 62988 0.68 0.814888
Target:  5'- cACCGCCGGCgccUGGcacccccgcacgugGCUGGAGCugguGCUc -3'
miRNA:   3'- -UGGCGGUCG---ACCa-------------UGACCUUGu---CGAa -5'
10756 5' -56.7 NC_002794.1 + 17993 0.68 0.811392
Target:  5'- gGCCGCCGGC-GaGUACUacGaGGACGGCg- -3'
miRNA:   3'- -UGGCGGUCGaC-CAUGA--C-CUUGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 37742 0.68 0.80787
Target:  5'- cGCCGCCGGCggcGGcGCggcggcgccggcgGGAGCGGCc- -3'
miRNA:   3'- -UGGCGGUCGa--CCaUGa------------CCUUGUCGaa -5'
10756 5' -56.7 NC_002794.1 + 115425 0.68 0.79353
Target:  5'- gACCGUCAGgaccUUGGU-CaGGAGCAGCUg -3'
miRNA:   3'- -UGGCGGUC----GACCAuGaCCUUGUCGAa -5'
10756 5' -56.7 NC_002794.1 + 112504 0.68 0.775083
Target:  5'- uACCGCgAGCggucgcGGUGCUGGcGCAGg-- -3'
miRNA:   3'- -UGGCGgUCGa-----CCAUGACCuUGUCgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.