miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10757 3' -57 NC_002794.1 + 111110 0.65 0.939193
Target:  5'- gGGACcguggccgucgacgGCGCCGGCGgccggUGCUC-CACGCGg -3'
miRNA:   3'- gCCUG--------------UGUGGCUGU-----GCGGGuGUGUGC- -5'
10757 3' -57 NC_002794.1 + 91008 0.66 0.936411
Target:  5'- gCGGGCcgACACCGACuucaccgagcucuggGCgGCCCucgggguggacgggGCGCGCGu -3'
miRNA:   3'- -GCCUG--UGUGGCUG---------------UG-CGGG--------------UGUGUGC- -5'
10757 3' -57 NC_002794.1 + 37999 0.66 0.93594
Target:  5'- cCGGGcCACGCCG-UAgGCCUGCAgCGCu -3'
miRNA:   3'- -GCCU-GUGUGGCuGUgCGGGUGU-GUGc -5'
10757 3' -57 NC_002794.1 + 12209 0.66 0.93594
Target:  5'- uCGGACGUGCCGGCggcgucggcgGCGCCgGCgGCGCc -3'
miRNA:   3'- -GCCUGUGUGGCUG----------UGCGGgUG-UGUGc -5'
10757 3' -57 NC_002794.1 + 102505 0.66 0.93594
Target:  5'- -uGuuGCAgCGGCugGCgCGCGCGCGg -3'
miRNA:   3'- gcCugUGUgGCUGugCGgGUGUGUGC- -5'
10757 3' -57 NC_002794.1 + 107517 0.66 0.93594
Target:  5'- cCGGuCgACGCCGACG-GCCgGCGCGgCGc -3'
miRNA:   3'- -GCCuG-UGUGGCUGUgCGGgUGUGU-GC- -5'
10757 3' -57 NC_002794.1 + 164473 0.66 0.93594
Target:  5'- uCGaGACACAUCGugGCuGCUgACuaguCACGg -3'
miRNA:   3'- -GC-CUGUGUGGCugUG-CGGgUGu---GUGC- -5'
10757 3' -57 NC_002794.1 + 128318 0.66 0.93594
Target:  5'- -cGugGCgACCGAgCcCGCCCGgACGCGg -3'
miRNA:   3'- gcCugUG-UGGCU-GuGCGGGUgUGUGC- -5'
10757 3' -57 NC_002794.1 + 11855 0.66 0.93594
Target:  5'- -cGAC-CGCCGGCGacgacCGCCCGCccCGCGa -3'
miRNA:   3'- gcCUGuGUGGCUGU-----GCGGGUGu-GUGC- -5'
10757 3' -57 NC_002794.1 + 75049 0.66 0.93594
Target:  5'- cCGGuucgauuCGCgACCGACgGCGUCgGCACACc -3'
miRNA:   3'- -GCCu------GUG-UGGCUG-UGCGGgUGUGUGc -5'
10757 3' -57 NC_002794.1 + 102410 0.66 0.935467
Target:  5'- cCGcGACGCggccgugGCCGAgGcCGCCaCGCGCAUGu -3'
miRNA:   3'- -GC-CUGUG-------UGGCUgU-GCGG-GUGUGUGC- -5'
10757 3' -57 NC_002794.1 + 71749 0.66 0.933065
Target:  5'- aGGcCGcCGCCGGCucuuccgaccgguccGCGCCguCGCGCGg -3'
miRNA:   3'- gCCuGU-GUGGCUG---------------UGCGGguGUGUGC- -5'
10757 3' -57 NC_002794.1 + 31912 0.66 0.931105
Target:  5'- -uGAUgaGCGCCGACAggacguccagcCGCgCCGCACGCu -3'
miRNA:   3'- gcCUG--UGUGGCUGU-----------GCG-GGUGUGUGc -5'
10757 3' -57 NC_002794.1 + 16235 0.66 0.931105
Target:  5'- aGGuCGgGCUGGCACGUCCcCGC-CGa -3'
miRNA:   3'- gCCuGUgUGGCUGUGCGGGuGUGuGC- -5'
10757 3' -57 NC_002794.1 + 79781 0.66 0.931105
Target:  5'- gCGGuuCGC-CCGcUACGCCCGCgaGCGCa -3'
miRNA:   3'- -GCCu-GUGuGGCuGUGCGGGUG--UGUGc -5'
10757 3' -57 NC_002794.1 + 124470 0.66 0.931105
Target:  5'- uCGG-CGuCGCCGccGCACGCCCGgAC-CGc -3'
miRNA:   3'- -GCCuGU-GUGGC--UGUGCGGGUgUGuGC- -5'
10757 3' -57 NC_002794.1 + 122290 0.66 0.931105
Target:  5'- uGGACGgGCgCGAgGagUGCCCGCugGCc -3'
miRNA:   3'- gCCUGUgUG-GCUgU--GCGGGUGugUGc -5'
10757 3' -57 NC_002794.1 + 59711 0.66 0.930609
Target:  5'- uGGuGCGCACCGACACcuucgagGCCgAC-CGCc -3'
miRNA:   3'- gCC-UGUGUGGCUGUG-------CGGgUGuGUGc -5'
10757 3' -57 NC_002794.1 + 108444 0.66 0.926047
Target:  5'- gCGGcacuCGCGgCGGCG-GCCCGCcgGCACGg -3'
miRNA:   3'- -GCCu---GUGUgGCUGUgCGGGUG--UGUGC- -5'
10757 3' -57 NC_002794.1 + 99239 0.66 0.926047
Target:  5'- gCGGAC-CGCCGG-AC-CCCGC-CGCGg -3'
miRNA:   3'- -GCCUGuGUGGCUgUGcGGGUGuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.