miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10757 5' -57 NC_002794.1 + 12368 0.66 0.916089
Target:  5'- uACC-UcgGCgUGCUCGCCUGccgcGCUCGc -3'
miRNA:   3'- -UGGuAuaCGaGCGAGCGGGCa---CGAGC- -5'
10757 5' -57 NC_002794.1 + 51193 0.66 0.916089
Target:  5'- gAUCGUucucGUUCGCUCGCCCGcggagcgGC-CGg -3'
miRNA:   3'- -UGGUAua--CGAGCGAGCGGGCa------CGaGC- -5'
10757 5' -57 NC_002794.1 + 138105 0.66 0.912645
Target:  5'- gACCGUcugcaggagggcgugGUGCUCG-UCGCCgGU-CUCGg -3'
miRNA:   3'- -UGGUA---------------UACGAGCgAGCGGgCAcGAGC- -5'
10757 5' -57 NC_002794.1 + 37940 0.66 0.910304
Target:  5'- gGCCGcccGUGCcucggCGaCUCGCUCGgcgGCUCGu -3'
miRNA:   3'- -UGGUa--UACGa----GC-GAGCGGGCa--CGAGC- -5'
10757 5' -57 NC_002794.1 + 131333 0.66 0.908523
Target:  5'- gGCCg---GCUCGCccgucgugacgguuUCGCCCGUGaUCa -3'
miRNA:   3'- -UGGuauaCGAGCG--------------AGCGGGCACgAGc -5'
10757 5' -57 NC_002794.1 + 93719 0.66 0.904291
Target:  5'- gACCugcuguUGCgcCGCUCGCgccgcgagaCCGUGCUCu -3'
miRNA:   3'- -UGGuau---ACGa-GCGAGCG---------GGCACGAGc -5'
10757 5' -57 NC_002794.1 + 61120 0.66 0.898054
Target:  5'- gACCAgcucGUGCUCuGCgCGCCCcUGCUg- -3'
miRNA:   3'- -UGGUa---UACGAG-CGaGCGGGcACGAgc -5'
10757 5' -57 NC_002794.1 + 70346 0.66 0.898054
Target:  5'- gGCCGggcGCcCGCUCGUCCGcccacccGCUCGc -3'
miRNA:   3'- -UGGUauaCGaGCGAGCGGGCa------CGAGC- -5'
10757 5' -57 NC_002794.1 + 20223 0.66 0.891594
Target:  5'- cGCCAUG-GCUCuCcgCGCCUGgaUGCUCGc -3'
miRNA:   3'- -UGGUAUaCGAGcGa-GCGGGC--ACGAGC- -5'
10757 5' -57 NC_002794.1 + 137170 0.66 0.891594
Target:  5'- cCCGgccGCUCGCUCGCCCGccccacagaGCaCGg -3'
miRNA:   3'- uGGUauaCGAGCGAGCGGGCa--------CGaGC- -5'
10757 5' -57 NC_002794.1 + 191201 0.66 0.891594
Target:  5'- cGCCcgcccGCUCGCUCGCUCGcucuCUCGc -3'
miRNA:   3'- -UGGuaua-CGAGCGAGCGGGCac--GAGC- -5'
10757 5' -57 NC_002794.1 + 101837 0.66 0.890276
Target:  5'- gGCCAUgcgggaGUGCgaggacgagacgCGC-CGCCUGcUGCUCGa -3'
miRNA:   3'- -UGGUA------UACGa-----------GCGaGCGGGC-ACGAGC- -5'
10757 5' -57 NC_002794.1 + 14504 0.67 0.884916
Target:  5'- gGCCcgc-GCUCGCggCGCUCGUggcgccGCUCGg -3'
miRNA:   3'- -UGGuauaCGAGCGa-GCGGGCA------CGAGC- -5'
10757 5' -57 NC_002794.1 + 193726 0.67 0.884916
Target:  5'- cGCCgGUGUcCUCGC-CGCCCGcgGCUuCGg -3'
miRNA:   3'- -UGG-UAUAcGAGCGaGCGGGCa-CGA-GC- -5'
10757 5' -57 NC_002794.1 + 131534 0.67 0.878023
Target:  5'- cGCCGg--GCcCGUcaucacggccUCGCCCGUGgUCGg -3'
miRNA:   3'- -UGGUauaCGaGCG----------AGCGGGCACgAGC- -5'
10757 5' -57 NC_002794.1 + 143755 0.67 0.870918
Target:  5'- cGCCGggggGCUcCGCUCGUCgucggUGUGCUCu -3'
miRNA:   3'- -UGGUaua-CGA-GCGAGCGG-----GCACGAGc -5'
10757 5' -57 NC_002794.1 + 136551 0.67 0.863608
Target:  5'- cACCGgGUaCUCGuCUCGCagGUGCUCGg -3'
miRNA:   3'- -UGGUaUAcGAGC-GAGCGggCACGAGC- -5'
10757 5' -57 NC_002794.1 + 151003 0.67 0.863608
Target:  5'- cGCCc---GCUucaacuucgagUGCUCGCCCGUGgUCGc -3'
miRNA:   3'- -UGGuauaCGA-----------GCGAGCGGGCACgAGC- -5'
10757 5' -57 NC_002794.1 + 84893 0.67 0.856098
Target:  5'- gGCUGUGUGcCUCGCU-GCCCauggGUUCGg -3'
miRNA:   3'- -UGGUAUAC-GAGCGAgCGGGca--CGAGC- -5'
10757 5' -57 NC_002794.1 + 49751 0.67 0.848393
Target:  5'- cCCGUAgGC-CGCUCGCaCGcGCUCGu -3'
miRNA:   3'- uGGUAUaCGaGCGAGCGgGCaCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.