miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10757 5' -57 NC_002794.1 + 187448 0.68 0.840499
Target:  5'- cGCCGUcUGC-CGC-CGCUCGgcgucGCUCGg -3'
miRNA:   3'- -UGGUAuACGaGCGaGCGGGCa----CGAGC- -5'
10757 5' -57 NC_002794.1 + 185942 0.68 0.840499
Target:  5'- cGCCAg--GCUCGCggccgCGCCCGUuucccuguccGUUCc -3'
miRNA:   3'- -UGGUauaCGAGCGa----GCGGGCA----------CGAGc -5'
10757 5' -57 NC_002794.1 + 57492 0.68 0.829966
Target:  5'- gACCAgGUGCgcgCGCcCGCCgccuacggcgaguuCGUGCUCa -3'
miRNA:   3'- -UGGUaUACGa--GCGaGCGG--------------GCACGAGc -5'
10757 5' -57 NC_002794.1 + 85797 0.68 0.824172
Target:  5'- aGCCAUcuUGcCUCGCUCGgCUccGCUCGg -3'
miRNA:   3'- -UGGUAu-AC-GAGCGAGCgGGcaCGAGC- -5'
10757 5' -57 NC_002794.1 + 13126 0.68 0.815753
Target:  5'- cGCCGcgcgGCUCGCUCGCgCG-GgUCGu -3'
miRNA:   3'- -UGGUaua-CGAGCGAGCGgGCaCgAGC- -5'
10757 5' -57 NC_002794.1 + 16690 0.68 0.807174
Target:  5'- cGCCAaGU-CUCGCUCGCgaGUcGCUCGc -3'
miRNA:   3'- -UGGUaUAcGAGCGAGCGggCA-CGAGC- -5'
10757 5' -57 NC_002794.1 + 123578 0.68 0.807174
Target:  5'- cGCCAcg-GC-CGC-CGCCCGUGCagCGu -3'
miRNA:   3'- -UGGUauaCGaGCGaGCGGGCACGa-GC- -5'
10757 5' -57 NC_002794.1 + 188688 0.69 0.762154
Target:  5'- gGCCAc--GCgguacaGCUCGCCCGUGCg-- -3'
miRNA:   3'- -UGGUauaCGag----CGAGCGGGCACGagc -5'
10757 5' -57 NC_002794.1 + 192298 0.69 0.752784
Target:  5'- gACCA---GCUucgCGCUCGUCCGcGCUCGc -3'
miRNA:   3'- -UGGUauaCGA---GCGAGCGGGCaCGAGC- -5'
10757 5' -57 NC_002794.1 + 131291 0.71 0.684817
Target:  5'- cGCCGUc-GCUcCGC-CGCCCGUGgUCGu -3'
miRNA:   3'- -UGGUAuaCGA-GCGaGCGGGCACgAGC- -5'
10757 5' -57 NC_002794.1 + 146497 0.71 0.674872
Target:  5'- cCCGUcgaGCUCGCggaGCCCcUGCUCGg -3'
miRNA:   3'- uGGUAua-CGAGCGag-CGGGcACGAGC- -5'
10757 5' -57 NC_002794.1 + 39873 0.71 0.654889
Target:  5'- cGCCAcc-GCUCGCuUCGCCCcccGCUCGc -3'
miRNA:   3'- -UGGUauaCGAGCG-AGCGGGca-CGAGC- -5'
10757 5' -57 NC_002794.1 + 189370 0.72 0.60476
Target:  5'- cCCAg--GCUgagcCGCUCGCCgcUGUGCUCGg -3'
miRNA:   3'- uGGUauaCGA----GCGAGCGG--GCACGAGC- -5'
10757 5' -57 NC_002794.1 + 46222 0.76 0.399154
Target:  5'- gGCCAgcucguccaGCUCGCUCGCCgGcgGCUCGu -3'
miRNA:   3'- -UGGUaua------CGAGCGAGCGGgCa-CGAGC- -5'
10757 5' -57 NC_002794.1 + 193764 0.77 0.34353
Target:  5'- cGCCGgccccGCUCGCUCGCCC--GCUCGa -3'
miRNA:   3'- -UGGUaua--CGAGCGAGCGGGcaCGAGC- -5'
10757 5' -57 NC_002794.1 + 109865 1.08 0.003552
Target:  5'- cACCAUAUGCUCGCUCGCCCGUGCUCGu -3'
miRNA:   3'- -UGGUAUACGAGCGAGCGGGCACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.