Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10757 | 5' | -57 | NC_002794.1 | + | 12368 | 0.66 | 0.916089 |
Target: 5'- uACC-UcgGCgUGCUCGCCUGccgcGCUCGc -3' miRNA: 3'- -UGGuAuaCGaGCGAGCGGGCa---CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 13126 | 0.68 | 0.815753 |
Target: 5'- cGCCGcgcgGCUCGCUCGCgCG-GgUCGu -3' miRNA: 3'- -UGGUaua-CGAGCGAGCGgGCaCgAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 14504 | 0.67 | 0.884916 |
Target: 5'- gGCCcgc-GCUCGCggCGCUCGUggcgccGCUCGg -3' miRNA: 3'- -UGGuauaCGAGCGa-GCGGGCA------CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 16690 | 0.68 | 0.807174 |
Target: 5'- cGCCAaGU-CUCGCUCGCgaGUcGCUCGc -3' miRNA: 3'- -UGGUaUAcGAGCGAGCGggCA-CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 20223 | 0.66 | 0.891594 |
Target: 5'- cGCCAUG-GCUCuCcgCGCCUGgaUGCUCGc -3' miRNA: 3'- -UGGUAUaCGAGcGa-GCGGGC--ACGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 37940 | 0.66 | 0.910304 |
Target: 5'- gGCCGcccGUGCcucggCGaCUCGCUCGgcgGCUCGu -3' miRNA: 3'- -UGGUa--UACGa----GC-GAGCGGGCa--CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 39873 | 0.71 | 0.654889 |
Target: 5'- cGCCAcc-GCUCGCuUCGCCCcccGCUCGc -3' miRNA: 3'- -UGGUauaCGAGCG-AGCGGGca-CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 46222 | 0.76 | 0.399154 |
Target: 5'- gGCCAgcucguccaGCUCGCUCGCCgGcgGCUCGu -3' miRNA: 3'- -UGGUaua------CGAGCGAGCGGgCa-CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 49751 | 0.67 | 0.848393 |
Target: 5'- cCCGUAgGC-CGCUCGCaCGcGCUCGu -3' miRNA: 3'- uGGUAUaCGaGCGAGCGgGCaCGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 51193 | 0.66 | 0.916089 |
Target: 5'- gAUCGUucucGUUCGCUCGCCCGcggagcgGC-CGg -3' miRNA: 3'- -UGGUAua--CGAGCGAGCGGGCa------CGaGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 57492 | 0.68 | 0.829966 |
Target: 5'- gACCAgGUGCgcgCGCcCGCCgccuacggcgaguuCGUGCUCa -3' miRNA: 3'- -UGGUaUACGa--GCGaGCGG--------------GCACGAGc -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 61120 | 0.66 | 0.898054 |
Target: 5'- gACCAgcucGUGCUCuGCgCGCCCcUGCUg- -3' miRNA: 3'- -UGGUa---UACGAG-CGaGCGGGcACGAgc -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 70346 | 0.66 | 0.898054 |
Target: 5'- gGCCGggcGCcCGCUCGUCCGcccacccGCUCGc -3' miRNA: 3'- -UGGUauaCGaGCGAGCGGGCa------CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 84893 | 0.67 | 0.856098 |
Target: 5'- gGCUGUGUGcCUCGCU-GCCCauggGUUCGg -3' miRNA: 3'- -UGGUAUAC-GAGCGAgCGGGca--CGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 85797 | 0.68 | 0.824172 |
Target: 5'- aGCCAUcuUGcCUCGCUCGgCUccGCUCGg -3' miRNA: 3'- -UGGUAu-AC-GAGCGAGCgGGcaCGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 93719 | 0.66 | 0.904291 |
Target: 5'- gACCugcuguUGCgcCGCUCGCgccgcgagaCCGUGCUCu -3' miRNA: 3'- -UGGuau---ACGa-GCGAGCG---------GGCACGAGc -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 101837 | 0.66 | 0.890276 |
Target: 5'- gGCCAUgcgggaGUGCgaggacgagacgCGC-CGCCUGcUGCUCGa -3' miRNA: 3'- -UGGUA------UACGa-----------GCGaGCGGGC-ACGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 109865 | 1.08 | 0.003552 |
Target: 5'- cACCAUAUGCUCGCUCGCCCGUGCUCGu -3' miRNA: 3'- -UGGUAUACGAGCGAGCGGGCACGAGC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 123578 | 0.68 | 0.807174 |
Target: 5'- cGCCAcg-GC-CGC-CGCCCGUGCagCGu -3' miRNA: 3'- -UGGUauaCGaGCGaGCGGGCACGa-GC- -5' |
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10757 | 5' | -57 | NC_002794.1 | + | 131291 | 0.71 | 0.684817 |
Target: 5'- cGCCGUc-GCUcCGC-CGCCCGUGgUCGu -3' miRNA: 3'- -UGGUAuaCGA-GCGaGCGGGCACgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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