miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10757 5' -57 NC_002794.1 + 131333 0.66 0.908523
Target:  5'- gGCCg---GCUCGCccgucgugacgguuUCGCCCGUGaUCa -3'
miRNA:   3'- -UGGuauaCGAGCG--------------AGCGGGCACgAGc -5'
10757 5' -57 NC_002794.1 + 131534 0.67 0.878023
Target:  5'- cGCCGg--GCcCGUcaucacggccUCGCCCGUGgUCGg -3'
miRNA:   3'- -UGGUauaCGaGCG----------AGCGGGCACgAGC- -5'
10757 5' -57 NC_002794.1 + 136551 0.67 0.863608
Target:  5'- cACCGgGUaCUCGuCUCGCagGUGCUCGg -3'
miRNA:   3'- -UGGUaUAcGAGC-GAGCGggCACGAGC- -5'
10757 5' -57 NC_002794.1 + 137170 0.66 0.891594
Target:  5'- cCCGgccGCUCGCUCGCCCGccccacagaGCaCGg -3'
miRNA:   3'- uGGUauaCGAGCGAGCGGGCa--------CGaGC- -5'
10757 5' -57 NC_002794.1 + 138105 0.66 0.912645
Target:  5'- gACCGUcugcaggagggcgugGUGCUCG-UCGCCgGU-CUCGg -3'
miRNA:   3'- -UGGUA---------------UACGAGCgAGCGGgCAcGAGC- -5'
10757 5' -57 NC_002794.1 + 143755 0.67 0.870918
Target:  5'- cGCCGggggGCUcCGCUCGUCgucggUGUGCUCu -3'
miRNA:   3'- -UGGUaua-CGA-GCGAGCGG-----GCACGAGc -5'
10757 5' -57 NC_002794.1 + 146497 0.71 0.674872
Target:  5'- cCCGUcgaGCUCGCggaGCCCcUGCUCGg -3'
miRNA:   3'- uGGUAua-CGAGCGag-CGGGcACGAGC- -5'
10757 5' -57 NC_002794.1 + 151003 0.67 0.863608
Target:  5'- cGCCc---GCUucaacuucgagUGCUCGCCCGUGgUCGc -3'
miRNA:   3'- -UGGuauaCGA-----------GCGAGCGGGCACgAGC- -5'
10757 5' -57 NC_002794.1 + 185942 0.68 0.840499
Target:  5'- cGCCAg--GCUCGCggccgCGCCCGUuucccuguccGUUCc -3'
miRNA:   3'- -UGGUauaCGAGCGa----GCGGGCA----------CGAGc -5'
10757 5' -57 NC_002794.1 + 187448 0.68 0.840499
Target:  5'- cGCCGUcUGC-CGC-CGCUCGgcgucGCUCGg -3'
miRNA:   3'- -UGGUAuACGaGCGaGCGGGCa----CGAGC- -5'
10757 5' -57 NC_002794.1 + 188688 0.69 0.762154
Target:  5'- gGCCAc--GCgguacaGCUCGCCCGUGCg-- -3'
miRNA:   3'- -UGGUauaCGag----CGAGCGGGCACGagc -5'
10757 5' -57 NC_002794.1 + 189370 0.72 0.60476
Target:  5'- cCCAg--GCUgagcCGCUCGCCgcUGUGCUCGg -3'
miRNA:   3'- uGGUauaCGA----GCGAGCGG--GCACGAGC- -5'
10757 5' -57 NC_002794.1 + 191201 0.66 0.891594
Target:  5'- cGCCcgcccGCUCGCUCGCUCGcucuCUCGc -3'
miRNA:   3'- -UGGuaua-CGAGCGAGCGGGCac--GAGC- -5'
10757 5' -57 NC_002794.1 + 192298 0.69 0.752784
Target:  5'- gACCA---GCUucgCGCUCGUCCGcGCUCGc -3'
miRNA:   3'- -UGGUauaCGA---GCGAGCGGGCaCGAGC- -5'
10757 5' -57 NC_002794.1 + 193726 0.67 0.884916
Target:  5'- cGCCgGUGUcCUCGC-CGCCCGcgGCUuCGg -3'
miRNA:   3'- -UGG-UAUAcGAGCGaGCGGGCa-CGA-GC- -5'
10757 5' -57 NC_002794.1 + 193764 0.77 0.34353
Target:  5'- cGCCGgccccGCUCGCUCGCCC--GCUCGa -3'
miRNA:   3'- -UGGUaua--CGAGCGAGCGGGcaCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.