miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 3' -53 NC_002794.1 + 51202 0.66 0.9826
Target:  5'- --cGUUcGCUcGCCcgcggagcGGCCGGCcGGCCg -3'
miRNA:   3'- gauCAAuCGAuCGG--------UCGGUCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 83421 0.66 0.9826
Target:  5'- -cGGau-GCUGGCCGGCaAGCcGGUCa -3'
miRNA:   3'- gaUCaauCGAUCGGUCGgUCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 108454 0.66 0.980507
Target:  5'- -----cGGCggcGGCCcGCCGGCacgGGCCg -3'
miRNA:   3'- gaucaaUCGa--UCGGuCGGUCGa--UCGG- -5'
10758 3' -53 NC_002794.1 + 182080 0.66 0.978231
Target:  5'- -cGGUcGGCcaccGCCAGCCAGCguucuucgcggUAGCg -3'
miRNA:   3'- gaUCAaUCGau--CGGUCGGUCG-----------AUCGg -5'
10758 3' -53 NC_002794.1 + 53063 0.66 0.978231
Target:  5'- gUAGgcAGCgccgcGCC-GCCAGCUcgcggcaccgGGCCa -3'
miRNA:   3'- gAUCaaUCGau---CGGuCGGUCGA----------UCGG- -5'
10758 3' -53 NC_002794.1 + 50369 0.66 0.978231
Target:  5'- ------cGCggAGCCGGCCGGCaGGaCCg -3'
miRNA:   3'- gaucaauCGa-UCGGUCGGUCGaUC-GG- -5'
10758 3' -53 NC_002794.1 + 33534 0.66 0.975765
Target:  5'- -----cGGcCUGGCCAcCCAGCUGGUg -3'
miRNA:   3'- gaucaaUC-GAUCGGUcGGUCGAUCGg -5'
10758 3' -53 NC_002794.1 + 55624 0.66 0.975765
Target:  5'- --cGUgcacGCUGGCCAGCaC-GCgGGCCg -3'
miRNA:   3'- gauCAau--CGAUCGGUCG-GuCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 53299 0.66 0.975765
Target:  5'- -aGGUgccgAGC-GGUCGGCCGGC--GCCg -3'
miRNA:   3'- gaUCAa---UCGaUCGGUCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 62269 0.66 0.975765
Target:  5'- cCUGGUcaAGCcggAGCuCGGCCuGCU-GCCg -3'
miRNA:   3'- -GAUCAa-UCGa--UCG-GUCGGuCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 192526 0.66 0.975765
Target:  5'- -cGGUUGccGCgcGUCAGCCAGUUAaaguGCCc -3'
miRNA:   3'- gaUCAAU--CGauCGGUCGGUCGAU----CGG- -5'
10758 3' -53 NC_002794.1 + 119381 0.66 0.973101
Target:  5'- gUGGUcgAGCUgGGCCAGCaccuGGCgccgcAGCCc -3'
miRNA:   3'- gAUCAa-UCGA-UCGGUCGg---UCGa----UCGG- -5'
10758 3' -53 NC_002794.1 + 115920 0.66 0.973101
Target:  5'- gUGGacUUGGCgcggcGGCgGGCCGGCccGCCg -3'
miRNA:   3'- gAUC--AAUCGa----UCGgUCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 16298 0.66 0.973101
Target:  5'- uCUAGccUGGC-GGCCgcGGCCGGCUGGa- -3'
miRNA:   3'- -GAUCa-AUCGaUCGG--UCGGUCGAUCgg -5'
10758 3' -53 NC_002794.1 + 80418 0.66 0.973101
Target:  5'- -aGGUggcgccgGGCggGGCCGccGCCGGC-GGCCg -3'
miRNA:   3'- gaUCAa------UCGa-UCGGU--CGGUCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 134158 0.66 0.973101
Target:  5'- --cGUguuGCUGGCCguGGCCGcGCggaUGGCCa -3'
miRNA:   3'- gauCAau-CGAUCGG--UCGGU-CG---AUCGG- -5'
10758 3' -53 NC_002794.1 + 100299 0.66 0.971978
Target:  5'- gCUGGUgccgccuccgccGCUGGCacgcgCGGCCGGCgcacGGCCg -3'
miRNA:   3'- -GAUCAau----------CGAUCG-----GUCGGUCGa---UCGG- -5'
10758 3' -53 NC_002794.1 + 147138 0.66 0.970231
Target:  5'- -cGGUUcgagacGGCcccggGGCCgcgagGGCCAGCUGGaCCg -3'
miRNA:   3'- gaUCAA------UCGa----UCGG-----UCGGUCGAUC-GG- -5'
10758 3' -53 NC_002794.1 + 124260 0.67 0.967148
Target:  5'- -cGGgUAGUc-GCCGGCCAGCc-GCCg -3'
miRNA:   3'- gaUCaAUCGauCGGUCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 75271 0.67 0.963503
Target:  5'- -----cGGCUccaccgcccacccGGCCGGCCGGCgccucGCCa -3'
miRNA:   3'- gaucaaUCGA-------------UCGGUCGGUCGau---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.