miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 3' -53 NC_002794.1 + 14193 0.69 0.92348
Target:  5'- --cGUcAGCgucCCGGCCcGCUGGCCg -3'
miRNA:   3'- gauCAaUCGaucGGUCGGuCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 57414 0.69 0.92348
Target:  5'- ------cGCgUGGCCGGCguGCUGGUCg -3'
miRNA:   3'- gaucaauCG-AUCGGUCGguCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 44244 0.69 0.92348
Target:  5'- -cGGgcGGCUcgguGCCGGgCGGCUcGGCCg -3'
miRNA:   3'- gaUCaaUCGAu---CGGUCgGUCGA-UCGG- -5'
10758 3' -53 NC_002794.1 + 180379 0.69 0.92348
Target:  5'- -gAGgacGCU-GCCGGCCAGCU-GCUc -3'
miRNA:   3'- gaUCaauCGAuCGGUCGGUCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 150155 0.7 0.878305
Target:  5'- ---uUUAGCgauCCGGCCGGCUuGCCa -3'
miRNA:   3'- gaucAAUCGaucGGUCGGUCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 144759 0.7 0.878305
Target:  5'- gUGGUUcugggaacgcAGCUGGCCGGCgucgccGCUGGCUu -3'
miRNA:   3'- gAUCAA----------UCGAUCGGUCGgu----CGAUCGG- -5'
10758 3' -53 NC_002794.1 + 58753 0.7 0.885479
Target:  5'- -cGGgcAGCUGGCggaggAGCCGcuGCUGGCCu -3'
miRNA:   3'- gaUCaaUCGAUCGg----UCGGU--CGAUCGG- -5'
10758 3' -53 NC_002794.1 + 36757 0.7 0.885479
Target:  5'- -cGGUccUGGCggacGGCCAcCCAGCUguAGCCg -3'
miRNA:   3'- gaUCA--AUCGa---UCGGUcGGUCGA--UCGG- -5'
10758 3' -53 NC_002794.1 + 60090 0.71 0.813182
Target:  5'- -cAGgu-GCUccaCGGCCAGCUGGCCg -3'
miRNA:   3'- gaUCaauCGAucgGUCGGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 139894 0.71 0.847372
Target:  5'- -cGGUgauGCgGGCCAGCC-GCaGGCCg -3'
miRNA:   3'- gaUCAau-CGaUCGGUCGGuCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 149183 0.72 0.786647
Target:  5'- uCUAGUcAGCgagcagagaaacgugAGCUAuCCGGCUGGCCg -3'
miRNA:   3'- -GAUCAaUCGa--------------UCGGUcGGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 157002 0.72 0.785709
Target:  5'- cCUAGcgGGCccgcGGCCAGCCGGCUuauucGCUc -3'
miRNA:   3'- -GAUCaaUCGa---UCGGUCGGUCGAu----CGG- -5'
10758 3' -53 NC_002794.1 + 48056 0.74 0.675868
Target:  5'- gCUGGgcacGGCgcugaUGGCCGGCCAGCgggagcAGCCg -3'
miRNA:   3'- -GAUCaa--UCG-----AUCGGUCGGUCGa-----UCGG- -5'
10758 3' -53 NC_002794.1 + 112331 0.77 0.520665
Target:  5'- -cGGggAGCgcGCCGGCCGGCggcGCCg -3'
miRNA:   3'- gaUCaaUCGauCGGUCGGUCGau-CGG- -5'
10758 3' -53 NC_002794.1 + 122992 0.78 0.471589
Target:  5'- cCUGGUgcgGGCcguGCUgacgGGCCGGCUGGCCg -3'
miRNA:   3'- -GAUCAa--UCGau-CGG----UCGGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 189639 0.89 0.109331
Target:  5'- gCUAGcUGGCUGGCUgacuAGCCGGCUGGCCg -3'
miRNA:   3'- -GAUCaAUCGAUCGG----UCGGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 109669 1.13 0.003121
Target:  5'- gCUAGUUAGCUAGCCAGCCAGCUAGCCg -3'
miRNA:   3'- -GAUCAAUCGAUCGGUCGGUCGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.