miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 3' -53 NC_002794.1 + 14193 0.69 0.92348
Target:  5'- --cGUcAGCgucCCGGCCcGCUGGCCg -3'
miRNA:   3'- gauCAaUCGaucGGUCGGuCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 114178 0.68 0.934168
Target:  5'- -gAGcUGGUUGGCCAgGCgCAGCggcGCCa -3'
miRNA:   3'- gaUCaAUCGAUCGGU-CG-GUCGau-CGG- -5'
10758 3' -53 NC_002794.1 + 25163 0.68 0.939137
Target:  5'- aUAGgcAGCcAGgCAGCCAGgcAGCCa -3'
miRNA:   3'- gAUCaaUCGaUCgGUCGGUCgaUCGG- -5'
10758 3' -53 NC_002794.1 + 113521 0.68 0.939137
Target:  5'- -gAGggAGCUccGCCGGCuCGGCgucGCCg -3'
miRNA:   3'- gaUCaaUCGAu-CGGUCG-GUCGau-CGG- -5'
10758 3' -53 NC_002794.1 + 48885 0.68 0.943397
Target:  5'- -cAGgUGGCaGGCCAGCguugccgCAGCUcggGGCCg -3'
miRNA:   3'- gaUCaAUCGaUCGGUCG-------GUCGA---UCGG- -5'
10758 3' -53 NC_002794.1 + 7738 0.68 0.948334
Target:  5'- uCUAGUUGuucuCUGcCCAGCCGGCgccugaAGCCu -3'
miRNA:   3'- -GAUCAAUc---GAUcGGUCGGUCGa-----UCGG- -5'
10758 3' -53 NC_002794.1 + 141628 0.68 0.948334
Target:  5'- -cGGUcUAGCgacgGGaaGGCCGGCgUGGCCg -3'
miRNA:   3'- gaUCA-AUCGa---UCggUCGGUCG-AUCGG- -5'
10758 3' -53 NC_002794.1 + 131025 0.68 0.948334
Target:  5'- gUGGUcguGC-GGCgCGGCCGGCU-GCCg -3'
miRNA:   3'- gAUCAau-CGaUCG-GUCGGUCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 60530 0.68 0.948334
Target:  5'- gCUGGUggAGa-AGCCGuGCCAGCUcuuccaggaGGCCu -3'
miRNA:   3'- -GAUCAa-UCgaUCGGU-CGGUCGA---------UCGG- -5'
10758 3' -53 NC_002794.1 + 22945 0.68 0.948334
Target:  5'- -----cGGCUGGCCgacgGGCCGGC--GCCg -3'
miRNA:   3'- gaucaaUCGAUCGG----UCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 138979 0.67 0.952567
Target:  5'- -gGGUUGGcCUGGCgGGCCuGCgcgaaGGCUu -3'
miRNA:   3'- gaUCAAUC-GAUCGgUCGGuCGa----UCGG- -5'
10758 3' -53 NC_002794.1 + 151637 0.67 0.952567
Target:  5'- ---cUUGGCUcgccGCCGGCCGGCacuUGGCUc -3'
miRNA:   3'- gaucAAUCGAu---CGGUCGGUCG---AUCGG- -5'
10758 3' -53 NC_002794.1 + 126061 0.67 0.952567
Target:  5'- aCUGGUcgcgcgccUGGcCUGGaCCGGCCuGC-GGCCg -3'
miRNA:   3'- -GAUCA--------AUC-GAUC-GGUCGGuCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 118626 0.67 0.95656
Target:  5'- -gAGgaugAGCUGcugcGCCAGCuCGGC-GGCCa -3'
miRNA:   3'- gaUCaa--UCGAU----CGGUCG-GUCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 184950 0.67 0.960318
Target:  5'- -----cAGCUGcGCCGGCCcGCgcAGCCg -3'
miRNA:   3'- gaucaaUCGAU-CGGUCGGuCGa-UCGG- -5'
10758 3' -53 NC_002794.1 + 25532 0.67 0.960318
Target:  5'- -----gAGCcucgaugAGCCGGCCAGuCUcAGCCg -3'
miRNA:   3'- gaucaaUCGa------UCGGUCGGUC-GA-UCGG- -5'
10758 3' -53 NC_002794.1 + 77124 0.67 0.960318
Target:  5'- ------cGCUccCCGGaCCAGCUGGCCg -3'
miRNA:   3'- gaucaauCGAucGGUC-GGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 75271 0.67 0.963503
Target:  5'- -----cGGCUccaccgcccacccGGCCGGCCGGCgccucGCCa -3'
miRNA:   3'- gaucaaUCGA-------------UCGGUCGGUCGau---CGG- -5'
10758 3' -53 NC_002794.1 + 124260 0.67 0.967148
Target:  5'- -cGGgUAGUc-GCCGGCCAGCc-GCCg -3'
miRNA:   3'- gaUCaAUCGauCGGUCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 147138 0.66 0.970231
Target:  5'- -cGGUUcgagacGGCcccggGGCCgcgagGGCCAGCUGGaCCg -3'
miRNA:   3'- gaUCAA------UCGa----UCGG-----UCGGUCGAUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.