Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10758 | 3' | -53 | NC_002794.1 | + | 184950 | 0.67 | 0.960318 |
Target: 5'- -----cAGCUGcGCCGGCCcGCgcAGCCg -3' miRNA: 3'- gaucaaUCGAU-CGGUCGGuCGa-UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 77124 | 0.67 | 0.960318 |
Target: 5'- ------cGCUccCCGGaCCAGCUGGCCg -3' miRNA: 3'- gaucaauCGAucGGUC-GGUCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 25532 | 0.67 | 0.960318 |
Target: 5'- -----gAGCcucgaugAGCCGGCCAGuCUcAGCCg -3' miRNA: 3'- gaucaaUCGa------UCGGUCGGUC-GA-UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 118626 | 0.67 | 0.95656 |
Target: 5'- -gAGgaugAGCUGcugcGCCAGCuCGGC-GGCCa -3' miRNA: 3'- gaUCaa--UCGAU----CGGUCG-GUCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 151637 | 0.67 | 0.952567 |
Target: 5'- ---cUUGGCUcgccGCCGGCCGGCacuUGGCUc -3' miRNA: 3'- gaucAAUCGAu---CGGUCGGUCG---AUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 126061 | 0.67 | 0.952567 |
Target: 5'- aCUGGUcgcgcgccUGGcCUGGaCCGGCCuGC-GGCCg -3' miRNA: 3'- -GAUCA--------AUC-GAUC-GGUCGGuCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 138979 | 0.67 | 0.952567 |
Target: 5'- -gGGUUGGcCUGGCgGGCCuGCgcgaaGGCUu -3' miRNA: 3'- gaUCAAUC-GAUCGgUCGGuCGa----UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 22945 | 0.68 | 0.948334 |
Target: 5'- -----cGGCUGGCCgacgGGCCGGC--GCCg -3' miRNA: 3'- gaucaaUCGAUCGG----UCGGUCGauCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 7738 | 0.68 | 0.948334 |
Target: 5'- uCUAGUUGuucuCUGcCCAGCCGGCgccugaAGCCu -3' miRNA: 3'- -GAUCAAUc---GAUcGGUCGGUCGa-----UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 60530 | 0.68 | 0.948334 |
Target: 5'- gCUGGUggAGa-AGCCGuGCCAGCUcuuccaggaGGCCu -3' miRNA: 3'- -GAUCAa-UCgaUCGGU-CGGUCGA---------UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 131025 | 0.68 | 0.948334 |
Target: 5'- gUGGUcguGC-GGCgCGGCCGGCU-GCCg -3' miRNA: 3'- gAUCAau-CGaUCG-GUCGGUCGAuCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 141628 | 0.68 | 0.948334 |
Target: 5'- -cGGUcUAGCgacgGGaaGGCCGGCgUGGCCg -3' miRNA: 3'- gaUCA-AUCGa---UCggUCGGUCG-AUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 48885 | 0.68 | 0.943397 |
Target: 5'- -cAGgUGGCaGGCCAGCguugccgCAGCUcggGGCCg -3' miRNA: 3'- gaUCaAUCGaUCGGUCG-------GUCGA---UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 113521 | 0.68 | 0.939137 |
Target: 5'- -gAGggAGCUccGCCGGCuCGGCgucGCCg -3' miRNA: 3'- gaUCaaUCGAu-CGGUCG-GUCGau-CGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 25163 | 0.68 | 0.939137 |
Target: 5'- aUAGgcAGCcAGgCAGCCAGgcAGCCa -3' miRNA: 3'- gAUCaaUCGaUCgGUCGGUCgaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 114178 | 0.68 | 0.934168 |
Target: 5'- -gAGcUGGUUGGCCAgGCgCAGCggcGCCa -3' miRNA: 3'- gaUCaAUCGAUCGGU-CG-GUCGau-CGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 180379 | 0.69 | 0.92348 |
Target: 5'- -gAGgacGCU-GCCGGCCAGCU-GCUc -3' miRNA: 3'- gaUCaauCGAuCGGUCGGUCGAuCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 44244 | 0.69 | 0.92348 |
Target: 5'- -cGGgcGGCUcgguGCCGGgCGGCUcGGCCg -3' miRNA: 3'- gaUCaaUCGAu---CGGUCgGUCGA-UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 57414 | 0.69 | 0.92348 |
Target: 5'- ------cGCgUGGCCGGCguGCUGGUCg -3' miRNA: 3'- gaucaauCG-AUCGGUCGguCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 14193 | 0.69 | 0.92348 |
Target: 5'- --cGUcAGCgucCCGGCCcGCUGGCCg -3' miRNA: 3'- gauCAaUCGaucGGUCGGuCGAUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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