Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10758 | 3' | -53 | NC_002794.1 | + | 181750 | 0.69 | 0.917762 |
Target: 5'- -----cGGCcGGCCAGCCcGCUGacGCCg -3' miRNA: 3'- gaucaaUCGaUCGGUCGGuCGAU--CGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 188896 | 0.69 | 0.917762 |
Target: 5'- -cAG-UGGCgGGCCAGCuCGGUcAGCCc -3' miRNA: 3'- gaUCaAUCGaUCGGUCG-GUCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 14566 | 0.69 | 0.90558 |
Target: 5'- -cGGgaGGCgAGCCGGCCgaccgaAGCgGGCCg -3' miRNA: 3'- gaUCaaUCGaUCGGUCGG------UCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 189563 | 0.69 | 0.899121 |
Target: 5'- -cGGUcccGCUcGGUCGGCCGGCccgGGCCg -3' miRNA: 3'- gaUCAau-CGA-UCGGUCGGUCGa--UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 58753 | 0.7 | 0.885479 |
Target: 5'- -cGGgcAGCUGGCggaggAGCCGcuGCUGGCCu -3' miRNA: 3'- gaUCaaUCGAUCGg----UCGGU--CGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 36757 | 0.7 | 0.885479 |
Target: 5'- -cGGUccUGGCggacGGCCAcCCAGCUguAGCCg -3' miRNA: 3'- gaUCA--AUCGa---UCGGUcGGUCGA--UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 144759 | 0.7 | 0.878305 |
Target: 5'- gUGGUUcugggaacgcAGCUGGCCGGCgucgccGCUGGCUu -3' miRNA: 3'- gAUCAA----------UCGAUCGGUCGgu----CGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 150155 | 0.7 | 0.878305 |
Target: 5'- ---uUUAGCgauCCGGCCGGCUuGCCa -3' miRNA: 3'- gaucAAUCGaucGGUCGGUCGAuCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 139894 | 0.71 | 0.847372 |
Target: 5'- -cGGUgauGCgGGCCAGCC-GCaGGCCg -3' miRNA: 3'- gaUCAau-CGaUCGGUCGGuCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 60090 | 0.71 | 0.813182 |
Target: 5'- -cAGgu-GCUccaCGGCCAGCUGGCCg -3' miRNA: 3'- gaUCaauCGAucgGUCGGUCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 149183 | 0.72 | 0.786647 |
Target: 5'- uCUAGUcAGCgagcagagaaacgugAGCUAuCCGGCUGGCCg -3' miRNA: 3'- -GAUCAaUCGa--------------UCGGUcGGUCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 157002 | 0.72 | 0.785709 |
Target: 5'- cCUAGcgGGCccgcGGCCAGCCGGCUuauucGCUc -3' miRNA: 3'- -GAUCaaUCGa---UCGGUCGGUCGAu----CGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 48056 | 0.74 | 0.675868 |
Target: 5'- gCUGGgcacGGCgcugaUGGCCGGCCAGCgggagcAGCCg -3' miRNA: 3'- -GAUCaa--UCG-----AUCGGUCGGUCGa-----UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 112331 | 0.77 | 0.520665 |
Target: 5'- -cGGggAGCgcGCCGGCCGGCggcGCCg -3' miRNA: 3'- gaUCaaUCGauCGGUCGGUCGau-CGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 122992 | 0.78 | 0.471589 |
Target: 5'- cCUGGUgcgGGCcguGCUgacgGGCCGGCUGGCCg -3' miRNA: 3'- -GAUCAa--UCGau-CGG----UCGGUCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 189639 | 0.89 | 0.109331 |
Target: 5'- gCUAGcUGGCUGGCUgacuAGCCGGCUGGCCg -3' miRNA: 3'- -GAUCaAUCGAUCGG----UCGGUCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 109669 | 1.13 | 0.003121 |
Target: 5'- gCUAGUUAGCUAGCCAGCCAGCUAGCCg -3' miRNA: 3'- -GAUCAAUCGAUCGGUCGGUCGAUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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