miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 3' -53 NC_002794.1 + 7738 0.68 0.948334
Target:  5'- uCUAGUUGuucuCUGcCCAGCCGGCgccugaAGCCu -3'
miRNA:   3'- -GAUCAAUc---GAUcGGUCGGUCGa-----UCGG- -5'
10758 3' -53 NC_002794.1 + 14193 0.69 0.92348
Target:  5'- --cGUcAGCgucCCGGCCcGCUGGCCg -3'
miRNA:   3'- gauCAaUCGaucGGUCGGuCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 14566 0.69 0.90558
Target:  5'- -cGGgaGGCgAGCCGGCCgaccgaAGCgGGCCg -3'
miRNA:   3'- gaUCaaUCGaUCGGUCGG------UCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 16298 0.66 0.973101
Target:  5'- uCUAGccUGGC-GGCCgcGGCCGGCUGGa- -3'
miRNA:   3'- -GAUCa-AUCGaUCGG--UCGGUCGAUCgg -5'
10758 3' -53 NC_002794.1 + 22945 0.68 0.948334
Target:  5'- -----cGGCUGGCCgacgGGCCGGC--GCCg -3'
miRNA:   3'- gaucaaUCGAUCGG----UCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 25163 0.68 0.939137
Target:  5'- aUAGgcAGCcAGgCAGCCAGgcAGCCa -3'
miRNA:   3'- gAUCaaUCGaUCgGUCGGUCgaUCGG- -5'
10758 3' -53 NC_002794.1 + 25532 0.67 0.960318
Target:  5'- -----gAGCcucgaugAGCCGGCCAGuCUcAGCCg -3'
miRNA:   3'- gaucaaUCGa------UCGGUCGGUC-GA-UCGG- -5'
10758 3' -53 NC_002794.1 + 33534 0.66 0.975765
Target:  5'- -----cGGcCUGGCCAcCCAGCUGGUg -3'
miRNA:   3'- gaucaaUC-GAUCGGUcGGUCGAUCGg -5'
10758 3' -53 NC_002794.1 + 36757 0.7 0.885479
Target:  5'- -cGGUccUGGCggacGGCCAcCCAGCUguAGCCg -3'
miRNA:   3'- gaUCA--AUCGa---UCGGUcGGUCGA--UCGG- -5'
10758 3' -53 NC_002794.1 + 44244 0.69 0.92348
Target:  5'- -cGGgcGGCUcgguGCCGGgCGGCUcGGCCg -3'
miRNA:   3'- gaUCaaUCGAu---CGGUCgGUCGA-UCGG- -5'
10758 3' -53 NC_002794.1 + 48056 0.74 0.675868
Target:  5'- gCUGGgcacGGCgcugaUGGCCGGCCAGCgggagcAGCCg -3'
miRNA:   3'- -GAUCaa--UCG-----AUCGGUCGGUCGa-----UCGG- -5'
10758 3' -53 NC_002794.1 + 48885 0.68 0.943397
Target:  5'- -cAGgUGGCaGGCCAGCguugccgCAGCUcggGGCCg -3'
miRNA:   3'- gaUCaAUCGaUCGGUCG-------GUCGA---UCGG- -5'
10758 3' -53 NC_002794.1 + 50369 0.66 0.978231
Target:  5'- ------cGCggAGCCGGCCGGCaGGaCCg -3'
miRNA:   3'- gaucaauCGa-UCGGUCGGUCGaUC-GG- -5'
10758 3' -53 NC_002794.1 + 51202 0.66 0.9826
Target:  5'- --cGUUcGCUcGCCcgcggagcGGCCGGCcGGCCg -3'
miRNA:   3'- gauCAAuCGAuCGG--------UCGGUCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 53063 0.66 0.978231
Target:  5'- gUAGgcAGCgccgcGCC-GCCAGCUcgcggcaccgGGCCa -3'
miRNA:   3'- gAUCaaUCGau---CGGuCGGUCGA----------UCGG- -5'
10758 3' -53 NC_002794.1 + 53299 0.66 0.975765
Target:  5'- -aGGUgccgAGC-GGUCGGCCGGC--GCCg -3'
miRNA:   3'- gaUCAa---UCGaUCGGUCGGUCGauCGG- -5'
10758 3' -53 NC_002794.1 + 55624 0.66 0.975765
Target:  5'- --cGUgcacGCUGGCCAGCaC-GCgGGCCg -3'
miRNA:   3'- gauCAau--CGAUCGGUCG-GuCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 57414 0.69 0.92348
Target:  5'- ------cGCgUGGCCGGCguGCUGGUCg -3'
miRNA:   3'- gaucaauCG-AUCGGUCGguCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 58753 0.7 0.885479
Target:  5'- -cGGgcAGCUGGCggaggAGCCGcuGCUGGCCu -3'
miRNA:   3'- gaUCaaUCGAUCGg----UCGGU--CGAUCGG- -5'
10758 3' -53 NC_002794.1 + 60090 0.71 0.813182
Target:  5'- -cAGgu-GCUccaCGGCCAGCUGGCCg -3'
miRNA:   3'- gaUCaauCGAucgGUCGGUCGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.