miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 3' -53 NC_002794.1 + 192526 0.66 0.975765
Target:  5'- -cGGUUGccGCgcGUCAGCCAGUUAaaguGCCc -3'
miRNA:   3'- gaUCAAU--CGauCGGUCGGUCGAU----CGG- -5'
10758 3' -53 NC_002794.1 + 189639 0.89 0.109331
Target:  5'- gCUAGcUGGCUGGCUgacuAGCCGGCUGGCCg -3'
miRNA:   3'- -GAUCaAUCGAUCGG----UCGGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 189563 0.69 0.899121
Target:  5'- -cGGUcccGCUcGGUCGGCCGGCccgGGCCg -3'
miRNA:   3'- gaUCAau-CGA-UCGGUCGGUCGa--UCGG- -5'
10758 3' -53 NC_002794.1 + 188896 0.69 0.917762
Target:  5'- -cAG-UGGCgGGCCAGCuCGGUcAGCCc -3'
miRNA:   3'- gaUCaAUCGaUCGGUCG-GUCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 184950 0.67 0.960318
Target:  5'- -----cAGCUGcGCCGGCCcGCgcAGCCg -3'
miRNA:   3'- gaucaaUCGAU-CGGUCGGuCGa-UCGG- -5'
10758 3' -53 NC_002794.1 + 182080 0.66 0.978231
Target:  5'- -cGGUcGGCcaccGCCAGCCAGCguucuucgcggUAGCg -3'
miRNA:   3'- gaUCAaUCGau--CGGUCGGUCG-----------AUCGg -5'
10758 3' -53 NC_002794.1 + 181750 0.69 0.917762
Target:  5'- -----cGGCcGGCCAGCCcGCUGacGCCg -3'
miRNA:   3'- gaucaaUCGaUCGGUCGGuCGAU--CGG- -5'
10758 3' -53 NC_002794.1 + 180379 0.69 0.92348
Target:  5'- -gAGgacGCU-GCCGGCCAGCU-GCUc -3'
miRNA:   3'- gaUCaauCGAuCGGUCGGUCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 157002 0.72 0.785709
Target:  5'- cCUAGcgGGCccgcGGCCAGCCGGCUuauucGCUc -3'
miRNA:   3'- -GAUCaaUCGa---UCGGUCGGUCGAu----CGG- -5'
10758 3' -53 NC_002794.1 + 151637 0.67 0.952567
Target:  5'- ---cUUGGCUcgccGCCGGCCGGCacuUGGCUc -3'
miRNA:   3'- gaucAAUCGAu---CGGUCGGUCG---AUCGG- -5'
10758 3' -53 NC_002794.1 + 150155 0.7 0.878305
Target:  5'- ---uUUAGCgauCCGGCCGGCUuGCCa -3'
miRNA:   3'- gaucAAUCGaucGGUCGGUCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 149183 0.72 0.786647
Target:  5'- uCUAGUcAGCgagcagagaaacgugAGCUAuCCGGCUGGCCg -3'
miRNA:   3'- -GAUCAaUCGa--------------UCGGUcGGUCGAUCGG- -5'
10758 3' -53 NC_002794.1 + 147138 0.66 0.970231
Target:  5'- -cGGUUcgagacGGCcccggGGCCgcgagGGCCAGCUGGaCCg -3'
miRNA:   3'- gaUCAA------UCGa----UCGG-----UCGGUCGAUC-GG- -5'
10758 3' -53 NC_002794.1 + 144759 0.7 0.878305
Target:  5'- gUGGUUcugggaacgcAGCUGGCCGGCgucgccGCUGGCUu -3'
miRNA:   3'- gAUCAA----------UCGAUCGGUCGgu----CGAUCGG- -5'
10758 3' -53 NC_002794.1 + 141628 0.68 0.948334
Target:  5'- -cGGUcUAGCgacgGGaaGGCCGGCgUGGCCg -3'
miRNA:   3'- gaUCA-AUCGa---UCggUCGGUCG-AUCGG- -5'
10758 3' -53 NC_002794.1 + 139894 0.71 0.847372
Target:  5'- -cGGUgauGCgGGCCAGCC-GCaGGCCg -3'
miRNA:   3'- gaUCAau-CGaUCGGUCGGuCGaUCGG- -5'
10758 3' -53 NC_002794.1 + 138979 0.67 0.952567
Target:  5'- -gGGUUGGcCUGGCgGGCCuGCgcgaaGGCUu -3'
miRNA:   3'- gaUCAAUC-GAUCGgUCGGuCGa----UCGG- -5'
10758 3' -53 NC_002794.1 + 134158 0.66 0.973101
Target:  5'- --cGUguuGCUGGCCguGGCCGcGCggaUGGCCa -3'
miRNA:   3'- gauCAau-CGAUCGG--UCGGU-CG---AUCGG- -5'
10758 3' -53 NC_002794.1 + 131025 0.68 0.948334
Target:  5'- gUGGUcguGC-GGCgCGGCCGGCU-GCCg -3'
miRNA:   3'- gAUCAau-CGaUCG-GUCGGUCGAuCGG- -5'
10758 3' -53 NC_002794.1 + 126061 0.67 0.952567
Target:  5'- aCUGGUcgcgcgccUGGcCUGGaCCGGCCuGC-GGCCg -3'
miRNA:   3'- -GAUCA--------AUC-GAUC-GGUCGGuCGaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.