Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10758 | 3' | -53 | NC_002794.1 | + | 108454 | 0.66 | 0.980507 |
Target: 5'- -----cGGCggcGGCCcGCCGGCacgGGCCg -3' miRNA: 3'- gaucaaUCGa--UCGGuCGGUCGa--UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 83421 | 0.66 | 0.9826 |
Target: 5'- -cGGau-GCUGGCCGGCaAGCcGGUCa -3' miRNA: 3'- gaUCaauCGAUCGGUCGgUCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 16298 | 0.66 | 0.973101 |
Target: 5'- uCUAGccUGGC-GGCCgcGGCCGGCUGGa- -3' miRNA: 3'- -GAUCa-AUCGaUCGG--UCGGUCGAUCgg -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 80418 | 0.66 | 0.973101 |
Target: 5'- -aGGUggcgccgGGCggGGCCGccGCCGGC-GGCCg -3' miRNA: 3'- gaUCAa------UCGa-UCGGU--CGGUCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 118626 | 0.67 | 0.95656 |
Target: 5'- -gAGgaugAGCUGcugcGCCAGCuCGGC-GGCCa -3' miRNA: 3'- gaUCaa--UCGAU----CGGUCG-GUCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 138979 | 0.67 | 0.952567 |
Target: 5'- -gGGUUGGcCUGGCgGGCCuGCgcgaaGGCUu -3' miRNA: 3'- gaUCAAUC-GAUCGgUCGGuCGa----UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 126061 | 0.67 | 0.952567 |
Target: 5'- aCUGGUcgcgcgccUGGcCUGGaCCGGCCuGC-GGCCg -3' miRNA: 3'- -GAUCA--------AUC-GAUC-GGUCGGuCGaUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 151637 | 0.67 | 0.952567 |
Target: 5'- ---cUUGGCUcgccGCCGGCCGGCacuUGGCUc -3' miRNA: 3'- gaucAAUCGAu---CGGUCGGUCG---AUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 184950 | 0.67 | 0.960318 |
Target: 5'- -----cAGCUGcGCCGGCCcGCgcAGCCg -3' miRNA: 3'- gaucaaUCGAU-CGGUCGGuCGa-UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 77124 | 0.67 | 0.960318 |
Target: 5'- ------cGCUccCCGGaCCAGCUGGCCg -3' miRNA: 3'- gaucaauCGAucGGUC-GGUCGAUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 25532 | 0.67 | 0.960318 |
Target: 5'- -----gAGCcucgaugAGCCGGCCAGuCUcAGCCg -3' miRNA: 3'- gaucaaUCGa------UCGGUCGGUC-GA-UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 75271 | 0.67 | 0.963503 |
Target: 5'- -----cGGCUccaccgcccacccGGCCGGCCGGCgccucGCCa -3' miRNA: 3'- gaucaaUCGA-------------UCGGUCGGUCGau---CGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 147138 | 0.66 | 0.970231 |
Target: 5'- -cGGUUcgagacGGCcccggGGCCgcgagGGCCAGCUGGaCCg -3' miRNA: 3'- gaUCAA------UCGa----UCGG-----UCGGUCGAUC-GG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 124260 | 0.67 | 0.967148 |
Target: 5'- -cGGgUAGUc-GCCGGCCAGCc-GCCg -3' miRNA: 3'- gaUCaAUCGauCGGUCGGUCGauCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 134158 | 0.66 | 0.973101 |
Target: 5'- --cGUguuGCUGGCCguGGCCGcGCggaUGGCCa -3' miRNA: 3'- gauCAau-CGAUCGG--UCGGU-CG---AUCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 100299 | 0.66 | 0.971978 |
Target: 5'- gCUGGUgccgccuccgccGCUGGCacgcgCGGCCGGCgcacGGCCg -3' miRNA: 3'- -GAUCAau----------CGAUCG-----GUCGGUCGa---UCGG- -5' |
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10758 | 3' | -53 | NC_002794.1 | + | 51202 | 0.66 | 0.9826 |
Target: 5'- --cGUUcGCUcGCCcgcggagcGGCCGGCcGGCCg -3' miRNA: 3'- gauCAAuCGAuCGG--------UCGGUCGaUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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