miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 153363 0.66 0.679311
Target:  5'- gCGGCCCGgCUGCgCGCCCucGUggUCg- -3'
miRNA:   3'- aGUCGGGCgGGCGgGCGGG--CAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 191068 0.66 0.679311
Target:  5'- cUCAGacaCUCGCCCG-CCGCCCGg----- -3'
miRNA:   3'- -AGUC---GGGCGGGCgGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 84999 0.66 0.679311
Target:  5'- -gAGCCCGaCCGCCgCGCUCGggUg-- -3'
miRNA:   3'- agUCGGGCgGGCGG-GCGGGCaaAgaa -5'
10758 5' -62.7 NC_002794.1 + 90214 0.66 0.678347
Target:  5'- cUCcGCCCGCCgCGCcggagccCCGCCUGUggUCc- -3'
miRNA:   3'- -AGuCGGGCGG-GCG-------GGCGGGCAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 109757 0.66 0.678347
Target:  5'- uUCAGCCCGUCgguucacaCGCCCcucucGCCCGaucgcucUUUCUc -3'
miRNA:   3'- -AGUCGGGCGG--------GCGGG-----CGGGC-------AAAGAa -5'
10758 5' -62.7 NC_002794.1 + 76460 0.66 0.669654
Target:  5'- --cGCCCGCCCcuccaccguccGCCgGCCCGg----- -3'
miRNA:   3'- aguCGGGCGGG-----------CGGgCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 115934 0.66 0.65997
Target:  5'- gCGGCggGCCgGCCCGCCgCGUgUCg- -3'
miRNA:   3'- aGUCGggCGGgCGGGCGG-GCAaAGaa -5'
10758 5' -62.7 NC_002794.1 + 85522 0.66 0.650265
Target:  5'- uUCGGCCuCGCCCcgcgGCuCCGCCCa------ -3'
miRNA:   3'- -AGUCGG-GCGGG----CG-GGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 191806 0.66 0.650265
Target:  5'- --cGCCCGCUCGgCCGCUCGa----- -3'
miRNA:   3'- aguCGGGCGGGCgGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 12382 0.66 0.650265
Target:  5'- --cGCCUGCCgCGCUCGCCUGg----- -3'
miRNA:   3'- aguCGGGCGG-GCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 189216 0.66 0.640547
Target:  5'- gUCGGUCCGCaCCaCCCGCuCCGUc---- -3'
miRNA:   3'- -AGUCGGGCG-GGcGGGCG-GGCAaagaa -5'
10758 5' -62.7 NC_002794.1 + 180024 0.66 0.640547
Target:  5'- aCGGCCgCGgCCGUCCGaCCCGcaUCa- -3'
miRNA:   3'- aGUCGG-GCgGGCGGGC-GGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 117562 0.66 0.640547
Target:  5'- -gAGCCgGUCgugcaGCCCGCCCGUcgagUCg- -3'
miRNA:   3'- agUCGGgCGGg----CGGGCGGGCAa---AGaa -5'
10758 5' -62.7 NC_002794.1 + 67835 0.66 0.640547
Target:  5'- cCGGCCCGCCguCGCCCgGCgCCGccgCg- -3'
miRNA:   3'- aGUCGGGCGG--GCGGG-CG-GGCaaaGaa -5'
10758 5' -62.7 NC_002794.1 + 46233 0.66 0.639575
Target:  5'- cCAGCUCGCUCGCCggcggcuCGUCCGcUUCc- -3'
miRNA:   3'- aGUCGGGCGGGCGG-------GCGGGCaAAGaa -5'
10758 5' -62.7 NC_002794.1 + 80452 0.66 0.639575
Target:  5'- cCGGCCCgucggcgGCCCG-CUGCCCGUcUUCc- -3'
miRNA:   3'- aGUCGGG-------CGGGCgGGCGGGCA-AAGaa -5'
10758 5' -62.7 NC_002794.1 + 194259 0.66 0.630823
Target:  5'- aCAGCUCGCCCGaCgCCGCCuCGc----- -3'
miRNA:   3'- aGUCGGGCGGGC-G-GGCGG-GCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 75938 0.66 0.630823
Target:  5'- cUCAGCuCCGCUCucguGCCCGCCU-UUUCc- -3'
miRNA:   3'- -AGUCG-GGCGGG----CGGGCGGGcAAAGaa -5'
10758 5' -62.7 NC_002794.1 + 29190 0.66 0.630823
Target:  5'- uUCGGUCaccaGUCCGUCCGUCCGgcggUCg- -3'
miRNA:   3'- -AGUCGGg---CGGGCGGGCGGGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 49621 0.66 0.6211
Target:  5'- cCGGCggCGCCuCGCCCGCCCc--UCUa -3'
miRNA:   3'- aGUCGg-GCGG-GCGGGCGGGcaaAGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.