Results 61 - 80 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 131335 | 0.7 | 0.435596 |
Target: 5'- cCGGCUCGCCCGUcgugacgguuUCGCCCGUgaUCa- -3' miRNA: 3'- aGUCGGGCGGGCG----------GGCGGGCAa-AGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 176220 | 0.7 | 0.444178 |
Target: 5'- -aGGCUCGCUCGUCuCGCCCGgugUCg- -3' miRNA: 3'- agUCGGGCGGGCGG-GCGGGCaa-AGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 31395 | 0.71 | 0.347969 |
Target: 5'- gCGGCCCcgccgcGCCCGCCgCGCCCGccgccUUCg- -3' miRNA: 3'- aGUCGGG------CGGGCGG-GCGGGCa----AAGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 101458 | 0.71 | 0.347233 |
Target: 5'- --cGCCCGCCCgaaacgccggcgcGCCCGCCCGa----- -3' miRNA: 3'- aguCGGGCGGG-------------CGGGCGGGCaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 69809 | 0.71 | 0.347969 |
Target: 5'- gUAGCCCGCCgccgcgaccggCGUCCGCCCGguccgCUg -3' miRNA: 3'- aGUCGGGCGG-----------GCGGGCGGGCaaa--GAa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 70353 | 0.71 | 0.355396 |
Target: 5'- --cGCCCGCUCGUCCGCCCa------ -3' miRNA: 3'- aguCGGGCGGGCGGGCGGGcaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 104419 | 0.71 | 0.386205 |
Target: 5'- cUCGGCCuCGgCCGCCgGCCCGg----- -3' miRNA: 3'- -AGUCGG-GCgGGCGGgCGGGCaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 181157 | 0.71 | 0.378339 |
Target: 5'- cCAGCCCGUCCGCCgCGCCg------- -3' miRNA: 3'- aGUCGGGCGGGCGG-GCGGgcaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 114749 | 0.71 | 0.355396 |
Target: 5'- cCGGCgCCGCCCGCCgGCgCCGguccUCg- -3' miRNA: 3'- aGUCG-GGCGGGCGGgCG-GGCaa--AGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 150998 | 0.71 | 0.389381 |
Target: 5'- -gAGCUCGCCCGCUucaacuucgagugcuCGCCCGUggUCg- -3' miRNA: 3'- agUCGGGCGGGCGG---------------GCGGGCAa-AGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 68873 | 0.72 | 0.319381 |
Target: 5'- -gGGCUCGCCgGCCuCGCCCGUUc--- -3' miRNA: 3'- agUCGGGCGGgCGG-GCGGGCAAagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 189599 | 0.72 | 0.305762 |
Target: 5'- cUUAGCCCGUCCGCCCGagaCCCGc----- -3' miRNA: 3'- -AGUCGGGCGGGCGGGC---GGGCaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 66296 | 0.72 | 0.340654 |
Target: 5'- --cGCCCGUCCGUCCGCCCucgcUUCg- -3' miRNA: 3'- aguCGGGCGGGCGGGCGGGca--AAGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 101937 | 0.72 | 0.32636 |
Target: 5'- uUCAGCCagggcaugcUGCCCuGCCUGCCCGUggCg- -3' miRNA: 3'- -AGUCGG---------GCGGG-CGGGCGGGCAaaGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 113260 | 0.73 | 0.286175 |
Target: 5'- gCAGCgCGUCCGCCCGCUCGgccagCUc -3' miRNA: 3'- aGUCGgGCGGGCGGGCGGGCaaa--GAa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 19345 | 0.73 | 0.299121 |
Target: 5'- cCGGUcacccccucgCCGCCCGcCCCGCCCGgaUCg- -3' miRNA: 3'- aGUCG----------GGCGGGC-GGGCGGGCaaAGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 193766 | 0.73 | 0.292592 |
Target: 5'- cCGGcCCCGCUCGCUCGCCCGc-UCg- -3' miRNA: 3'- aGUC-GGGCGGGCGGGCGGGCaaAGaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 60940 | 0.73 | 0.273675 |
Target: 5'- aUCGGCCUGCaCCGCCUGCUCGa----- -3' miRNA: 3'- -AGUCGGGCG-GGCGGGCGGGCaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 130643 | 0.73 | 0.279869 |
Target: 5'- cCGGCCCGCCCG-CCGCCCc------ -3' miRNA: 3'- aGUCGGGCGGGCgGGCGGGcaaagaa -5' |
|||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 189905 | 0.74 | 0.249993 |
Target: 5'- gUCAGCgccgccgcgcgaCCGCCCGCUCGCCCGa----- -3' miRNA: 3'- -AGUCG------------GGCGGGCGGGCGGGCaaagaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home