Results 81 - 86 of 86 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 10758 | 5' | -62.7 | NC_002794.1 | + | 191193 | 0.75 | 0.212646 |
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Target: 5'- --cGCCCGgCCGCCCGCCCGc-UCg- -3' miRNA: 3'- aguCGGGCgGGCGGGCGGGCaaAGaa -5' |
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| 10758 | 5' | -62.7 | NC_002794.1 | + | 103018 | 0.75 | 0.212646 |
|
Target: 5'- cUAGCCCGCCCGCCaGCCCcgcUCUc -3' miRNA: 3'- aGUCGGGCGGGCGGgCGGGcaaAGAa -5' |
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| 10758 | 5' | -62.7 | NC_002794.1 | + | 137136 | 0.75 | 0.202893 |
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Target: 5'- --cGUCCGUCCGCCCGCCCGg----- -3' miRNA: 3'- aguCGGGCGGGCGGGCGGGCaaagaa -5' |
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| 10758 | 5' | -62.7 | NC_002794.1 | + | 99398 | 0.77 | 0.152213 |
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Target: 5'- -uGGCgCCGUCCGCCCGCCCGccgUCg- -3' miRNA: 3'- agUCG-GGCGGGCGGGCGGGCaa-AGaa -5' |
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| 10758 | 5' | -62.7 | NC_002794.1 | + | 189970 | 0.77 | 0.167683 |
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Target: 5'- aCGGgCCGCCCGCUCGCCCGa----- -3' miRNA: 3'- aGUCgGGCGGGCGGGCGGGCaaagaa -5' |
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| 10758 | 5' | -62.7 | NC_002794.1 | + | 109703 | 1.05 | 0.001749 |
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Target: 5'- gUCAGCCCGCCCGCCCGCCCGUUUCUUc -3' miRNA: 3'- -AGUCGGGCGGGCGGGCGGGCAAAGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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