miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 109703 1.05 0.001749
Target:  5'- gUCAGCCCGCCCGCCCGCCCGUUUCUUc -3'
miRNA:   3'- -AGUCGGGCGGGCGGGCGGGCAAAGAA- -5'
10758 5' -62.7 NC_002794.1 + 99398 0.77 0.152213
Target:  5'- -uGGCgCCGUCCGCCCGCCCGccgUCg- -3'
miRNA:   3'- agUCG-GGCGGGCGGGCGGGCaa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 189970 0.77 0.167683
Target:  5'- aCGGgCCGCCCGCUCGCCCGa----- -3'
miRNA:   3'- aGUCgGGCGGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 137136 0.75 0.202893
Target:  5'- --cGUCCGUCCGCCCGCCCGg----- -3'
miRNA:   3'- aguCGGGCGGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 103018 0.75 0.212646
Target:  5'- cUAGCCCGCCCGCCaGCCCcgcUCUc -3'
miRNA:   3'- aGUCGGGCGGGCGGgCGGGcaaAGAa -5'
10758 5' -62.7 NC_002794.1 + 191193 0.75 0.212646
Target:  5'- --cGCCCGgCCGCCCGCCCGc-UCg- -3'
miRNA:   3'- aguCGGGCgGGCGGGCGGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 189905 0.74 0.249993
Target:  5'- gUCAGCgccgccgcgcgaCCGCCCGCUCGCCCGa----- -3'
miRNA:   3'- -AGUCG------------GGCGGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 60940 0.73 0.273675
Target:  5'- aUCGGCCUGCaCCGCCUGCUCGa----- -3'
miRNA:   3'- -AGUCGGGCG-GGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 130643 0.73 0.279869
Target:  5'- cCGGCCCGCCCG-CCGCCCc------ -3'
miRNA:   3'- aGUCGGGCGGGCgGGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 113260 0.73 0.286175
Target:  5'- gCAGCgCGUCCGCCCGCUCGgccagCUc -3'
miRNA:   3'- aGUCGgGCGGGCGGGCGGGCaaa--GAa -5'
10758 5' -62.7 NC_002794.1 + 193766 0.73 0.292592
Target:  5'- cCGGcCCCGCUCGCUCGCCCGc-UCg- -3'
miRNA:   3'- aGUC-GGGCGGGCGGGCGGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 19345 0.73 0.299121
Target:  5'- cCGGUcacccccucgCCGCCCGcCCCGCCCGgaUCg- -3'
miRNA:   3'- aGUCG----------GGCGGGC-GGGCGGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 189599 0.72 0.305762
Target:  5'- cUUAGCCCGUCCGCCCGagaCCCGc----- -3'
miRNA:   3'- -AGUCGGGCGGGCGGGC---GGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 68873 0.72 0.319381
Target:  5'- -gGGCUCGCCgGCCuCGCCCGUUc--- -3'
miRNA:   3'- agUCGGGCGGgCGG-GCGGGCAAagaa -5'
10758 5' -62.7 NC_002794.1 + 101937 0.72 0.32636
Target:  5'- uUCAGCCagggcaugcUGCCCuGCCUGCCCGUggCg- -3'
miRNA:   3'- -AGUCGG---------GCGGG-CGGGCGGGCAaaGaa -5'
10758 5' -62.7 NC_002794.1 + 66296 0.72 0.340654
Target:  5'- --cGCCCGUCCGUCCGCCCucgcUUCg- -3'
miRNA:   3'- aguCGGGCGGGCGGGCGGGca--AAGaa -5'
10758 5' -62.7 NC_002794.1 + 101458 0.71 0.347233
Target:  5'- --cGCCCGCCCgaaacgccggcgcGCCCGCCCGa----- -3'
miRNA:   3'- aguCGGGCGGG-------------CGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 31395 0.71 0.347969
Target:  5'- gCGGCCCcgccgcGCCCGCCgCGCCCGccgccUUCg- -3'
miRNA:   3'- aGUCGGG------CGGGCGG-GCGGGCa----AAGaa -5'
10758 5' -62.7 NC_002794.1 + 69809 0.71 0.347969
Target:  5'- gUAGCCCGCCgccgcgaccggCGUCCGCCCGguccgCUg -3'
miRNA:   3'- aGUCGGGCGG-----------GCGGGCGGGCaaa--GAa -5'
10758 5' -62.7 NC_002794.1 + 114749 0.71 0.355396
Target:  5'- cCGGCgCCGCCCGCCgGCgCCGguccUCg- -3'
miRNA:   3'- aGUCG-GGCGGGCGGgCG-GGCaa--AGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.