miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 114749 0.71 0.355396
Target:  5'- cCGGCgCCGCCCGCCgGCgCCGguccUCg- -3'
miRNA:   3'- aGUCG-GGCGGGCGGgCG-GGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 181157 0.71 0.378339
Target:  5'- cCAGCCCGUCCGCCgCGCCg------- -3'
miRNA:   3'- aGUCGGGCGGGCGG-GCGGgcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 104419 0.71 0.386205
Target:  5'- cUCGGCCuCGgCCGCCgGCCCGg----- -3'
miRNA:   3'- -AGUCGG-GCgGGCGGgCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 150998 0.71 0.389381
Target:  5'- -gAGCUCGCCCGCUucaacuucgagugcuCGCCCGUggUCg- -3'
miRNA:   3'- agUCGGGCGGGCGG---------------GCGGGCAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 65752 0.7 0.418725
Target:  5'- aCGGcCCCGCgCCGCcgCCGCCCGUg---- -3'
miRNA:   3'- aGUC-GGGCG-GGCG--GGCGGGCAaagaa -5'
10758 5' -62.7 NC_002794.1 + 79089 0.7 0.418725
Target:  5'- cUCGcgcuCCCGCCCGCCCGCgcgaugacggCCGUcUUCUUc -3'
miRNA:   3'- -AGUc---GGGCGGGCGGGCG----------GGCA-AAGAA- -5'
10758 5' -62.7 NC_002794.1 + 183449 0.7 0.427111
Target:  5'- --cGCCCGCCaccgccggCGCCCGCCCGccgCg- -3'
miRNA:   3'- aguCGGGCGG--------GCGGGCGGGCaaaGaa -5'
10758 5' -62.7 NC_002794.1 + 131335 0.7 0.435596
Target:  5'- cCGGCUCGCCCGUcgugacgguuUCGCCCGUgaUCa- -3'
miRNA:   3'- aGUCGGGCGGGCG----------GGCGGGCAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 176220 0.7 0.444178
Target:  5'- -aGGCUCGCUCGUCuCGCCCGgugUCg- -3'
miRNA:   3'- agUCGGGCGGGCGG-GCGGGCaa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 181757 0.69 0.450241
Target:  5'- cCAGCCCGCugacgccgauggcgCCGCgCCGCCgCGUcUCg- -3'
miRNA:   3'- aGUCGGGCG--------------GGCG-GGCGG-GCAaAGaa -5'
10758 5' -62.7 NC_002794.1 + 99611 0.69 0.452853
Target:  5'- --cGCUCGCgCCGCCuCGgcCCCGUUUCUg -3'
miRNA:   3'- aguCGGGCG-GGCGG-GC--GGGCAAAGAa -5'
10758 5' -62.7 NC_002794.1 + 82550 0.69 0.452853
Target:  5'- gCGGCCCuCCCGCCgGCCCa------ -3'
miRNA:   3'- aGUCGGGcGGGCGGgCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 137176 0.69 0.452853
Target:  5'- --cGCUCGCUCGCCCGCCCc------ -3'
miRNA:   3'- aguCGGGCGGGCGGGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 185933 0.69 0.46074
Target:  5'- cCGGCCa-CCCGCCaggcucgcggccgCGCCCGUUUCc- -3'
miRNA:   3'- aGUCGGgcGGGCGG-------------GCGGGCAAAGaa -5'
10758 5' -62.7 NC_002794.1 + 52605 0.69 0.470476
Target:  5'- --cGUCCGCCCgagacGCCCGCCCGa----- -3'
miRNA:   3'- aguCGGGCGGG-----CGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 189990 0.69 0.470476
Target:  5'- aCGGUCCGUCCggguccaucgGCCCGUCCGggUCc- -3'
miRNA:   3'- aGUCGGGCGGG----------CGGGCGGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 14948 0.69 0.479418
Target:  5'- aUCGGCUCGCCCGCC-GCCuCGa----- -3'
miRNA:   3'- -AGUCGGGCGGGCGGgCGG-GCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 194515 0.69 0.479418
Target:  5'- gCGGCCCGCgugCCGCCgGCCCa------ -3'
miRNA:   3'- aGUCGGGCG---GGCGGgCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 74515 0.69 0.488442
Target:  5'- gCAGCUCGCCUGCCUcCCCGa----- -3'
miRNA:   3'- aGUCGGGCGGGCGGGcGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 68423 0.68 0.503962
Target:  5'- cUCGGCacgguggcccaccaCCGCugguuCCGCCUgGCCCGUUUCUUc -3'
miRNA:   3'- -AGUCG--------------GGCG-----GGCGGG-CGGGCAAAGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.