miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 53243 0.66 0.6211
Target:  5'- cUCGGCCCGCCgCGCCgGCgUCGccgCg- -3'
miRNA:   3'- -AGUCGGGCGG-GCGGgCG-GGCaaaGaa -5'
10758 5' -62.7 NC_002794.1 + 183725 0.66 0.618185
Target:  5'- gUCAGCCCGCaCgCGCCCagcaggaucaggccGCCCGc----- -3'
miRNA:   3'- -AGUCGGGCG-G-GCGGG--------------CGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 190660 0.67 0.611385
Target:  5'- aUCAcGUCgCGCCCGCCgCGCCgcCGggUCUc -3'
miRNA:   3'- -AGU-CGG-GCGGGCGG-GCGG--GCaaAGAa -5'
10758 5' -62.7 NC_002794.1 + 72808 0.67 0.611385
Target:  5'- cCuGCCCGCUccguCGCCCGUCCGa----- -3'
miRNA:   3'- aGuCGGGCGG----GCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 116638 0.67 0.601684
Target:  5'- gCGGCagggGCCCGgCCGUCCGgcUCUUg -3'
miRNA:   3'- aGUCGgg--CGGGCgGGCGGGCaaAGAA- -5'
10758 5' -62.7 NC_002794.1 + 44442 0.67 0.592003
Target:  5'- aCA-CCgGCgCGCCCGCCCGgacgUCg- -3'
miRNA:   3'- aGUcGGgCGgGCGGGCGGGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 183527 0.67 0.582348
Target:  5'- gCGGCCgugcgCGcCCCGUCCGCCCGg----- -3'
miRNA:   3'- aGUCGG-----GC-GGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 78053 0.67 0.582348
Target:  5'- gUCAGaaCGCCCGCcgCCGCCCGa----- -3'
miRNA:   3'- -AGUCggGCGGGCG--GGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 109510 0.67 0.582348
Target:  5'- gUUGGUCCGCCCgGCCCGCgCuCG-UUCg- -3'
miRNA:   3'- -AGUCGGGCGGG-CGGGCG-G-GCaAAGaa -5'
10758 5' -62.7 NC_002794.1 + 42260 0.67 0.572726
Target:  5'- -gAGCCCGCuCCGCCCucGCCCc------ -3'
miRNA:   3'- agUCGGGCG-GGCGGG--CGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 1062 0.67 0.572726
Target:  5'- --cGCCCGCCC-CCC-CCCGggggUUCg- -3'
miRNA:   3'- aguCGGGCGGGcGGGcGGGCa---AAGaa -5'
10758 5' -62.7 NC_002794.1 + 76966 0.67 0.563142
Target:  5'- cCGGCCgGCCCGCCgaGCUCGa----- -3'
miRNA:   3'- aGUCGGgCGGGCGGg-CGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 143273 0.67 0.563142
Target:  5'- cCGGCCCgGCgCCGgCCGCUCGgggUCg- -3'
miRNA:   3'- aGUCGGG-CG-GGCgGGCGGGCaa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 131538 0.67 0.563142
Target:  5'- -gGGCCCGUCaucacgGCCuCGCCCGUggUCg- -3'
miRNA:   3'- agUCGGGCGGg-----CGG-GCGGGCAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 187903 0.68 0.553601
Target:  5'- gCGGUgCCGCUCGCCCGCCgGg----- -3'
miRNA:   3'- aGUCG-GGCGGGCGGGCGGgCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 30098 0.68 0.553601
Target:  5'- gCGGCCgGuCCCGacccaCCGCCCGggUUUUc -3'
miRNA:   3'- aGUCGGgC-GGGCg----GGCGGGCaaAGAA- -5'
10758 5' -62.7 NC_002794.1 + 123885 0.68 0.553601
Target:  5'- cCAGCUgcugCGuUCCGCCCGCCCGag-CUg -3'
miRNA:   3'- aGUCGG----GC-GGGCGGGCGGGCaaaGAa -5'
10758 5' -62.7 NC_002794.1 + 191530 0.68 0.553601
Target:  5'- gUCGGCCCGCgCCuCCCGCCgcaguCGggUCc- -3'
miRNA:   3'- -AGUCGGGCG-GGcGGGCGG-----GCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 84114 0.68 0.544109
Target:  5'- aCAcCCCGCgCCGCCgCGCCCGa----- -3'
miRNA:   3'- aGUcGGGCG-GGCGG-GCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 24031 0.68 0.529035
Target:  5'- cUCGGCgacggcggucccuccCCGUCCGCCCGCCCc------ -3'
miRNA:   3'- -AGUCG---------------GGCGGGCGGGCGGGcaaagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.