miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 1062 0.67 0.572726
Target:  5'- --cGCCCGCCC-CCC-CCCGggggUUCg- -3'
miRNA:   3'- aguCGGGCGGGcGGGcGGGCa---AAGaa -5'
10758 5' -62.7 NC_002794.1 + 12382 0.66 0.650265
Target:  5'- --cGCCUGCCgCGCUCGCCUGg----- -3'
miRNA:   3'- aguCGGGCGG-GCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 14948 0.69 0.479418
Target:  5'- aUCGGCUCGCCCGCC-GCCuCGa----- -3'
miRNA:   3'- -AGUCGGGCGGGCGGgCGG-GCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 19345 0.73 0.299121
Target:  5'- cCGGUcacccccucgCCGCCCGcCCCGCCCGgaUCg- -3'
miRNA:   3'- aGUCG----------GGCGGGC-GGGCGGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 24031 0.68 0.529035
Target:  5'- cUCGGCgacggcggucccuccCCGUCCGCCCGCCCc------ -3'
miRNA:   3'- -AGUCG---------------GGCGGGCGGGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 29190 0.66 0.630823
Target:  5'- uUCGGUCaccaGUCCGUCCGUCCGgcggUCg- -3'
miRNA:   3'- -AGUCGGg---CGGGCGGGCGGGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 30098 0.68 0.553601
Target:  5'- gCGGCCgGuCCCGacccaCCGCCCGggUUUUc -3'
miRNA:   3'- aGUCGGgC-GGGCg----GGCGGGCaaAGAA- -5'
10758 5' -62.7 NC_002794.1 + 31342 0.68 0.515973
Target:  5'- --cGCCCGCcguguccgCCGCCCGCUCGUcgaagUCg- -3'
miRNA:   3'- aguCGGGCG--------GGCGGGCGGGCAa----AGaa -5'
10758 5' -62.7 NC_002794.1 + 31395 0.71 0.347969
Target:  5'- gCGGCCCcgccgcGCCCGCCgCGCCCGccgccUUCg- -3'
miRNA:   3'- aGUCGGG------CGGGCGG-GCGGGCa----AAGaa -5'
10758 5' -62.7 NC_002794.1 + 34949 0.68 0.52529
Target:  5'- cCGGCCCGCCgCGaCCCGCgccucCCGUccCUg -3'
miRNA:   3'- aGUCGGGCGG-GC-GGGCG-----GGCAaaGAa -5'
10758 5' -62.7 NC_002794.1 + 42260 0.67 0.572726
Target:  5'- -gAGCCCGCuCCGCCCucGCCCc------ -3'
miRNA:   3'- agUCGGGCG-GGCGGG--CGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 44442 0.67 0.592003
Target:  5'- aCA-CCgGCgCGCCCGCCCGgacgUCg- -3'
miRNA:   3'- aGUcGGgCGgGCGGGCGGGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 46233 0.66 0.639575
Target:  5'- cCAGCUCGCUCGCCggcggcuCGUCCGcUUCc- -3'
miRNA:   3'- aGUCGGGCGGGCGG-------GCGGGCaAAGaa -5'
10758 5' -62.7 NC_002794.1 + 49621 0.66 0.6211
Target:  5'- cCGGCggCGCCuCGCCCGCCCc--UCUa -3'
miRNA:   3'- aGUCGg-GCGG-GCGGGCGGGcaaAGAa -5'
10758 5' -62.7 NC_002794.1 + 52605 0.69 0.470476
Target:  5'- --cGUCCGCCCgagacGCCCGCCCGa----- -3'
miRNA:   3'- aguCGGGCGGG-----CGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 53243 0.66 0.6211
Target:  5'- cUCGGCCCGCCgCGCCgGCgUCGccgCg- -3'
miRNA:   3'- -AGUCGGGCGG-GCGGgCG-GGCaaaGaa -5'
10758 5' -62.7 NC_002794.1 + 53423 0.68 0.506723
Target:  5'- gCGGCCCGCUcuCGCUCGCCCu------ -3'
miRNA:   3'- aGUCGGGCGG--GCGGGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 55525 0.68 0.52529
Target:  5'- cCAGCCCggcgGCCCcgucGCCCuCCCGUUugcUCUUg -3'
miRNA:   3'- aGUCGGG----CGGG----CGGGcGGGCAA---AGAA- -5'
10758 5' -62.7 NC_002794.1 + 60940 0.73 0.273675
Target:  5'- aUCGGCCUGCaCCGCCUGCUCGa----- -3'
miRNA:   3'- -AGUCGGGCG-GGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 65752 0.7 0.418725
Target:  5'- aCGGcCCCGCgCCGCcgCCGCCCGUg---- -3'
miRNA:   3'- aGUC-GGGCG-GGCG--GGCGGGCAaagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.