miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 66296 0.72 0.340654
Target:  5'- --cGCCCGUCCGUCCGCCCucgcUUCg- -3'
miRNA:   3'- aguCGGGCGGGCGGGCGGGca--AAGaa -5'
10758 5' -62.7 NC_002794.1 + 67835 0.66 0.640547
Target:  5'- cCGGCCCGCCguCGCCCgGCgCCGccgCg- -3'
miRNA:   3'- aGUCGGGCGG--GCGGG-CG-GGCaaaGaa -5'
10758 5' -62.7 NC_002794.1 + 68423 0.68 0.503962
Target:  5'- cUCGGCacgguggcccaccaCCGCugguuCCGCCUgGCCCGUUUCUUc -3'
miRNA:   3'- -AGUCG--------------GGCG-----GGCGGG-CGGGCAAAGAA- -5'
10758 5' -62.7 NC_002794.1 + 68873 0.72 0.319381
Target:  5'- -gGGCUCGCCgGCCuCGCCCGUUc--- -3'
miRNA:   3'- agUCGGGCGGgCGG-GCGGGCAAagaa -5'
10758 5' -62.7 NC_002794.1 + 69809 0.71 0.347969
Target:  5'- gUAGCCCGCCgccgcgaccggCGUCCGCCCGguccgCUg -3'
miRNA:   3'- aGUCGGGCGG-----------GCGGGCGGGCaaa--GAa -5'
10758 5' -62.7 NC_002794.1 + 70353 0.71 0.355396
Target:  5'- --cGCCCGCUCGUCCGCCCa------ -3'
miRNA:   3'- aguCGGGCGGGCGGGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 72808 0.67 0.611385
Target:  5'- cCuGCCCGCUccguCGCCCGUCCGa----- -3'
miRNA:   3'- aGuCGGGCGG----GCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 74515 0.69 0.488442
Target:  5'- gCAGCUCGCCUGCCUcCCCGa----- -3'
miRNA:   3'- aGUCGGGCGGGCGGGcGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 75938 0.66 0.630823
Target:  5'- cUCAGCuCCGCUCucguGCCCGCCU-UUUCc- -3'
miRNA:   3'- -AGUCG-GGCGGG----CGGGCGGGcAAAGaa -5'
10758 5' -62.7 NC_002794.1 + 76460 0.66 0.669654
Target:  5'- --cGCCCGCCCcuccaccguccGCCgGCCCGg----- -3'
miRNA:   3'- aguCGGGCGGG-----------CGGgCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 76966 0.67 0.563142
Target:  5'- cCGGCCgGCCCGCCgaGCUCGa----- -3'
miRNA:   3'- aGUCGGgCGGGCGGg-CGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 78053 0.67 0.582348
Target:  5'- gUCAGaaCGCCCGCcgCCGCCCGa----- -3'
miRNA:   3'- -AGUCggGCGGGCG--GGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 79089 0.7 0.418725
Target:  5'- cUCGcgcuCCCGCCCGCCCGCgcgaugacggCCGUcUUCUUc -3'
miRNA:   3'- -AGUc---GGGCGGGCGGGCG----------GGCA-AAGAA- -5'
10758 5' -62.7 NC_002794.1 + 79781 0.68 0.52529
Target:  5'- gCGGUUCGCCCGCUaCGCCCGc----- -3'
miRNA:   3'- aGUCGGGCGGGCGG-GCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 80452 0.66 0.639575
Target:  5'- cCGGCCCgucggcgGCCCG-CUGCCCGUcUUCc- -3'
miRNA:   3'- aGUCGGG-------CGGGCgGGCGGGCA-AAGaa -5'
10758 5' -62.7 NC_002794.1 + 82550 0.69 0.452853
Target:  5'- gCGGCCCuCCCGCCgGCCCa------ -3'
miRNA:   3'- aGUCGGGcGGGCGGgCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 84114 0.68 0.544109
Target:  5'- aCAcCCCGCgCCGCCgCGCCCGa----- -3'
miRNA:   3'- aGUcGGGCG-GGCGG-GCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 84999 0.66 0.679311
Target:  5'- -gAGCCCGaCCGCCgCGCUCGggUg-- -3'
miRNA:   3'- agUCGGGCgGGCGG-GCGGGCaaAgaa -5'
10758 5' -62.7 NC_002794.1 + 85522 0.66 0.650265
Target:  5'- uUCGGCCuCGCCCcgcgGCuCCGCCCa------ -3'
miRNA:   3'- -AGUCGG-GCGGG----CG-GGCGGGcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 90214 0.66 0.678347
Target:  5'- cUCcGCCCGCCgCGCcggagccCCGCCUGUggUCc- -3'
miRNA:   3'- -AGuCGGGCGG-GCG-------GGCGGGCAa-AGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.