miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 143273 0.67 0.563142
Target:  5'- cCGGCCCgGCgCCGgCCGCUCGgggUCg- -3'
miRNA:   3'- aGUCGGG-CG-GGCgGGCGGGCaa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 150998 0.71 0.389381
Target:  5'- -gAGCUCGCCCGCUucaacuucgagugcuCGCCCGUggUCg- -3'
miRNA:   3'- agUCGGGCGGGCGG---------------GCGGGCAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 153363 0.66 0.679311
Target:  5'- gCGGCCCGgCUGCgCGCCCucGUggUCg- -3'
miRNA:   3'- aGUCGGGCgGGCGgGCGGG--CAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 176220 0.7 0.444178
Target:  5'- -aGGCUCGCUCGUCuCGCCCGgugUCg- -3'
miRNA:   3'- agUCGGGCGGGCGG-GCGGGCaa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 180024 0.66 0.640547
Target:  5'- aCGGCCgCGgCCGUCCGaCCCGcaUCa- -3'
miRNA:   3'- aGUCGG-GCgGGCGGGC-GGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 181157 0.71 0.378339
Target:  5'- cCAGCCCGUCCGCCgCGCCg------- -3'
miRNA:   3'- aGUCGGGCGGGCGG-GCGGgcaaagaa -5'
10758 5' -62.7 NC_002794.1 + 181757 0.69 0.450241
Target:  5'- cCAGCCCGCugacgccgauggcgCCGCgCCGCCgCGUcUCg- -3'
miRNA:   3'- aGUCGGGCG--------------GGCG-GGCGG-GCAaAGaa -5'
10758 5' -62.7 NC_002794.1 + 183449 0.7 0.427111
Target:  5'- --cGCCCGCCaccgccggCGCCCGCCCGccgCg- -3'
miRNA:   3'- aguCGGGCGG--------GCGGGCGGGCaaaGaa -5'
10758 5' -62.7 NC_002794.1 + 183527 0.67 0.582348
Target:  5'- gCGGCCgugcgCGcCCCGUCCGCCCGg----- -3'
miRNA:   3'- aGUCGG-----GC-GGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 183725 0.66 0.618185
Target:  5'- gUCAGCCCGCaCgCGCCCagcaggaucaggccGCCCGc----- -3'
miRNA:   3'- -AGUCGGGCG-G-GCGGG--------------CGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 185933 0.69 0.46074
Target:  5'- cCGGCCa-CCCGCCaggcucgcggccgCGCCCGUUUCc- -3'
miRNA:   3'- aGUCGGgcGGGCGG-------------GCGGGCAAAGaa -5'
10758 5' -62.7 NC_002794.1 + 187903 0.68 0.553601
Target:  5'- gCGGUgCCGCUCGCCCGCCgGg----- -3'
miRNA:   3'- aGUCG-GGCGGGCGGGCGGgCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 188345 0.68 0.506723
Target:  5'- gCGGCgCCGUCgCGCCCGUCCGg----- -3'
miRNA:   3'- aGUCG-GGCGG-GCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 189216 0.66 0.640547
Target:  5'- gUCGGUCCGCaCCaCCCGCuCCGUc---- -3'
miRNA:   3'- -AGUCGGGCG-GGcGGGCG-GGCAaagaa -5'
10758 5' -62.7 NC_002794.1 + 189599 0.72 0.305762
Target:  5'- cUUAGCCCGUCCGCCCGagaCCCGc----- -3'
miRNA:   3'- -AGUCGGGCGGGCGGGC---GGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 189905 0.74 0.249993
Target:  5'- gUCAGCgccgccgcgcgaCCGCCCGCUCGCCCGa----- -3'
miRNA:   3'- -AGUCG------------GGCGGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 189970 0.77 0.167683
Target:  5'- aCGGgCCGCCCGCUCGCCCGa----- -3'
miRNA:   3'- aGUCgGGCGGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 189990 0.69 0.470476
Target:  5'- aCGGUCCGUCCggguccaucgGCCCGUCCGggUCc- -3'
miRNA:   3'- aGUCGGGCGGG----------CGGGCGGGCaaAGaa -5'
10758 5' -62.7 NC_002794.1 + 190660 0.67 0.611385
Target:  5'- aUCAcGUCgCGCCCGCCgCGCCgcCGggUCUc -3'
miRNA:   3'- -AGU-CGG-GCGGGCGG-GCGG--GCaaAGAa -5'
10758 5' -62.7 NC_002794.1 + 191068 0.66 0.679311
Target:  5'- cUCAGacaCUCGCCCG-CCGCCCGg----- -3'
miRNA:   3'- -AGUC---GGGCGGGCgGGCGGGCaaagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.