Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10758 | 5' | -62.7 | NC_002794.1 | + | 194515 | 0.69 | 0.479418 |
Target: 5'- gCGGCCCGCgugCCGCCgGCCCa------ -3' miRNA: 3'- aGUCGGGCG---GGCGGgCGGGcaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 194259 | 0.66 | 0.630823 |
Target: 5'- aCAGCUCGCCCGaCgCCGCCuCGc----- -3' miRNA: 3'- aGUCGGGCGGGC-G-GGCGG-GCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 193766 | 0.73 | 0.292592 |
Target: 5'- cCGGcCCCGCUCGCUCGCCCGc-UCg- -3' miRNA: 3'- aGUC-GGGCGGGCGGGCGGGCaaAGaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 191806 | 0.66 | 0.650265 |
Target: 5'- --cGCCCGCUCGgCCGCUCGa----- -3' miRNA: 3'- aguCGGGCGGGCgGGCGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 191530 | 0.68 | 0.553601 |
Target: 5'- gUCGGCCCGCgCCuCCCGCCgcaguCGggUCc- -3' miRNA: 3'- -AGUCGGGCG-GGcGGGCGG-----GCaaAGaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 191193 | 0.75 | 0.212646 |
Target: 5'- --cGCCCGgCCGCCCGCCCGc-UCg- -3' miRNA: 3'- aguCGGGCgGGCGGGCGGGCaaAGaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 191068 | 0.66 | 0.679311 |
Target: 5'- cUCAGacaCUCGCCCG-CCGCCCGg----- -3' miRNA: 3'- -AGUC---GGGCGGGCgGGCGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 190660 | 0.67 | 0.611385 |
Target: 5'- aUCAcGUCgCGCCCGCCgCGCCgcCGggUCUc -3' miRNA: 3'- -AGU-CGG-GCGGGCGG-GCGG--GCaaAGAa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 189990 | 0.69 | 0.470476 |
Target: 5'- aCGGUCCGUCCggguccaucgGCCCGUCCGggUCc- -3' miRNA: 3'- aGUCGGGCGGG----------CGGGCGGGCaaAGaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 189970 | 0.77 | 0.167683 |
Target: 5'- aCGGgCCGCCCGCUCGCCCGa----- -3' miRNA: 3'- aGUCgGGCGGGCGGGCGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 189905 | 0.74 | 0.249993 |
Target: 5'- gUCAGCgccgccgcgcgaCCGCCCGCUCGCCCGa----- -3' miRNA: 3'- -AGUCG------------GGCGGGCGGGCGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 189599 | 0.72 | 0.305762 |
Target: 5'- cUUAGCCCGUCCGCCCGagaCCCGc----- -3' miRNA: 3'- -AGUCGGGCGGGCGGGC---GGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 189216 | 0.66 | 0.640547 |
Target: 5'- gUCGGUCCGCaCCaCCCGCuCCGUc---- -3' miRNA: 3'- -AGUCGGGCG-GGcGGGCG-GGCAaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 188345 | 0.68 | 0.506723 |
Target: 5'- gCGGCgCCGUCgCGCCCGUCCGg----- -3' miRNA: 3'- aGUCG-GGCGG-GCGGGCGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 187903 | 0.68 | 0.553601 |
Target: 5'- gCGGUgCCGCUCGCCCGCCgGg----- -3' miRNA: 3'- aGUCG-GGCGGGCGGGCGGgCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 185933 | 0.69 | 0.46074 |
Target: 5'- cCGGCCa-CCCGCCaggcucgcggccgCGCCCGUUUCc- -3' miRNA: 3'- aGUCGGgcGGGCGG-------------GCGGGCAAAGaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 183725 | 0.66 | 0.618185 |
Target: 5'- gUCAGCCCGCaCgCGCCCagcaggaucaggccGCCCGc----- -3' miRNA: 3'- -AGUCGGGCG-G-GCGGG--------------CGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 183527 | 0.67 | 0.582348 |
Target: 5'- gCGGCCgugcgCGcCCCGUCCGCCCGg----- -3' miRNA: 3'- aGUCGG-----GC-GGGCGGGCGGGCaaagaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 183449 | 0.7 | 0.427111 |
Target: 5'- --cGCCCGCCaccgccggCGCCCGCCCGccgCg- -3' miRNA: 3'- aguCGGGCGG--------GCGGGCGGGCaaaGaa -5' |
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10758 | 5' | -62.7 | NC_002794.1 | + | 181757 | 0.69 | 0.450241 |
Target: 5'- cCAGCCCGCugacgccgauggcgCCGCgCCGCCgCGUcUCg- -3' miRNA: 3'- aGUCGGGCG--------------GGCG-GGCGG-GCAaAGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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