miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10758 5' -62.7 NC_002794.1 + 109757 0.66 0.678347
Target:  5'- uUCAGCCCGUCgguucacaCGCCCcucucGCCCGaucgcucUUUCUc -3'
miRNA:   3'- -AGUCGGGCGG--------GCGGG-----CGGGC-------AAAGAa -5'
10758 5' -62.7 NC_002794.1 + 76460 0.66 0.669654
Target:  5'- --cGCCCGCCCcuccaccguccGCCgGCCCGg----- -3'
miRNA:   3'- aguCGGGCGGG-----------CGGgCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 90214 0.66 0.678347
Target:  5'- cUCcGCCCGCCgCGCcggagccCCGCCUGUggUCc- -3'
miRNA:   3'- -AGuCGGGCGG-GCG-------GGCGGGCAa-AGaa -5'
10758 5' -62.7 NC_002794.1 + 84999 0.66 0.679311
Target:  5'- -gAGCCCGaCCGCCgCGCUCGggUg-- -3'
miRNA:   3'- agUCGGGCgGGCGG-GCGGGCaaAgaa -5'
10758 5' -62.7 NC_002794.1 + 191068 0.66 0.679311
Target:  5'- cUCAGacaCUCGCCCG-CCGCCCGg----- -3'
miRNA:   3'- -AGUC---GGGCGGGCgGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 80452 0.66 0.639575
Target:  5'- cCGGCCCgucggcgGCCCG-CUGCCCGUcUUCc- -3'
miRNA:   3'- aGUCGGG-------CGGGCgGGCGGGCA-AAGaa -5'
10758 5' -62.7 NC_002794.1 + 189216 0.66 0.640547
Target:  5'- gUCGGUCCGCaCCaCCCGCuCCGUc---- -3'
miRNA:   3'- -AGUCGGGCG-GGcGGGCG-GGCAaagaa -5'
10758 5' -62.7 NC_002794.1 + 109510 0.67 0.582348
Target:  5'- gUUGGUCCGCCCgGCCCGCgCuCG-UUCg- -3'
miRNA:   3'- -AGUCGGGCGGG-CGGGCG-G-GCaAAGaa -5'
10758 5' -62.7 NC_002794.1 + 78053 0.67 0.582348
Target:  5'- gUCAGaaCGCCCGCcgCCGCCCGa----- -3'
miRNA:   3'- -AGUCggGCGGGCG--GGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 116638 0.67 0.601684
Target:  5'- gCGGCagggGCCCGgCCGUCCGgcUCUUg -3'
miRNA:   3'- aGUCGgg--CGGGCgGGCGGGCaaAGAA- -5'
10758 5' -62.7 NC_002794.1 + 44442 0.67 0.592003
Target:  5'- aCA-CCgGCgCGCCCGCCCGgacgUCg- -3'
miRNA:   3'- aGUcGGgCGgGCGGGCGGGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 183527 0.67 0.582348
Target:  5'- gCGGCCgugcgCGcCCCGUCCGCCCGg----- -3'
miRNA:   3'- aGUCGG-----GC-GGGCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 72808 0.67 0.611385
Target:  5'- cCuGCCCGCUccguCGCCCGUCCGa----- -3'
miRNA:   3'- aGuCGGGCGG----GCGGGCGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 183725 0.66 0.618185
Target:  5'- gUCAGCCCGCaCgCGCCCagcaggaucaggccGCCCGc----- -3'
miRNA:   3'- -AGUCGGGCG-G-GCGGG--------------CGGGCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 190660 0.67 0.611385
Target:  5'- aUCAcGUCgCGCCCGCCgCGCCgcCGggUCUc -3'
miRNA:   3'- -AGU-CGG-GCGGGCGG-GCGG--GCaaAGAa -5'
10758 5' -62.7 NC_002794.1 + 49621 0.66 0.6211
Target:  5'- cCGGCggCGCCuCGCCCGCCCc--UCUa -3'
miRNA:   3'- aGUCGg-GCGG-GCGGGCGGGcaaAGAa -5'
10758 5' -62.7 NC_002794.1 + 29190 0.66 0.630823
Target:  5'- uUCGGUCaccaGUCCGUCCGUCCGgcggUCg- -3'
miRNA:   3'- -AGUCGGg---CGGGCGGGCGGGCaa--AGaa -5'
10758 5' -62.7 NC_002794.1 + 75938 0.66 0.630823
Target:  5'- cUCAGCuCCGCUCucguGCCCGCCU-UUUCc- -3'
miRNA:   3'- -AGUCG-GGCGGG----CGGGCGGGcAAAGaa -5'
10758 5' -62.7 NC_002794.1 + 194259 0.66 0.630823
Target:  5'- aCAGCUCGCCCGaCgCCGCCuCGc----- -3'
miRNA:   3'- aGUCGGGCGGGC-G-GGCGG-GCaaagaa -5'
10758 5' -62.7 NC_002794.1 + 53243 0.66 0.6211
Target:  5'- cUCGGCCCGCCgCGCCgGCgUCGccgCg- -3'
miRNA:   3'- -AGUCGGGCGG-GCGGgCG-GGCaaaGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.