miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 183692 0.66 0.903252
Target:  5'- --aGCGCCcGCcGCGCGCGG--CgGCa -3'
miRNA:   3'- cuaCGUGGuCGaCGUGCGCCuaGgCG- -5'
10759 3' -57.4 NC_002794.1 + 77876 0.66 0.903252
Target:  5'- -uUGCugCAGCUGCuccCGCccGUaCCGCc -3'
miRNA:   3'- cuACGugGUCGACGu--GCGccUA-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 120768 0.66 0.903252
Target:  5'- --gGC-CCuGCUGCgACGCcGAUUCGCc -3'
miRNA:   3'- cuaCGuGGuCGACG-UGCGcCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 99698 0.66 0.903252
Target:  5'- --cGCGCUGGC-GC-CGCGGAuguucuUUCGCg -3'
miRNA:   3'- cuaCGUGGUCGaCGuGCGCCU------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 90942 0.66 0.903252
Target:  5'- cGUGgGCgGGCUGUGCGCcgaggcccGGGcCCGCu -3'
miRNA:   3'- cUACgUGgUCGACGUGCG--------CCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 77131 0.66 0.903252
Target:  5'- --cGgACCAGCUgGCcgaagACGCGGAg-CGCg -3'
miRNA:   3'- cuaCgUGGUCGA-CG-----UGCGCCUagGCG- -5'
10759 3' -57.4 NC_002794.1 + 124958 0.66 0.903252
Target:  5'- uGGUGCuggAGCUGCucaaGUGGAUCgCGCc -3'
miRNA:   3'- -CUACGuggUCGACGug--CGCCUAG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 185027 0.66 0.903252
Target:  5'- cGGUG-ACCAGCUccaaguacggcaGCAacaGCGuGGUCUGCa -3'
miRNA:   3'- -CUACgUGGUCGA------------CGUg--CGC-CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 36346 0.66 0.896973
Target:  5'- --aGCAacCCGGCgUGCGCGgccacCGGGUgCGCg -3'
miRNA:   3'- cuaCGU--GGUCG-ACGUGC-----GCCUAgGCG- -5'
10759 3' -57.4 NC_002794.1 + 123940 0.66 0.896973
Target:  5'- --gGCACCgcguaccgucugAGCcGCGCGCaGGAgCCGUa -3'
miRNA:   3'- cuaCGUGG------------UCGaCGUGCG-CCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 118275 0.66 0.896973
Target:  5'- gGcgGCGCCGGCgu--CGgGGA-CCGCg -3'
miRNA:   3'- -CuaCGUGGUCGacguGCgCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 60420 0.66 0.896973
Target:  5'- --cGCGCCAaCcGCACGCucuUCCGCa -3'
miRNA:   3'- cuaCGUGGUcGaCGUGCGccuAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 91236 0.66 0.896973
Target:  5'- cGcgGCgGCCgucgGGCUGCGCucGCGGAcgCCGUu -3'
miRNA:   3'- -CuaCG-UGG----UCGACGUG--CGCCUa-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 180154 0.66 0.896973
Target:  5'- --cGCAgCAGCaGUugGUGGGgauagCCGUg -3'
miRNA:   3'- cuaCGUgGUCGaCGugCGCCUa----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 43242 0.66 0.893098
Target:  5'- aGcgGCACCGGCcggaacgccggguggUaGCAcuCGCaGAUCCGCu -3'
miRNA:   3'- -CuaCGUGGUCG---------------A-CGU--GCGcCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 57136 0.66 0.893098
Target:  5'- uGGUGCACaacuuccugcucacgCuGCUGCGCaaGGcgCCGCc -3'
miRNA:   3'- -CUACGUG---------------GuCGACGUGcgCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 139469 0.66 0.893098
Target:  5'- cGUGCGCCAGgacggugguguagaUGgGCGCGGGcgcgCUGCa -3'
miRNA:   3'- cUACGUGGUCg-------------ACgUGCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 182091 0.66 0.890471
Target:  5'- --cGCcaGCCAGCguucuucGCGguaGCGGAUCCGg -3'
miRNA:   3'- cuaCG--UGGUCGa------CGUg--CGCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 183463 0.66 0.890471
Target:  5'- --gGCGCCcGCccGC-CGCGaGUCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa-CGuGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 52106 0.66 0.890471
Target:  5'- cGUGCugCAGCUGCACccguucuuucUGGAagUGCg -3'
miRNA:   3'- cUACGugGUCGACGUGc---------GCCUagGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.