Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10759 | 3' | -57.4 | NC_002794.1 | + | 109344 | 1.12 | 0.00164 |
Target: 5'- aGAUGCACCAGCUGCACGCGGAUCCGCa -3' miRNA: 3'- -CUACGUGGUCGACGUGCGCCUAGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 193062 | 0.8 | 0.225867 |
Target: 5'- --cGCACCGGCUGCGggccguCGCGGGacagCCGCa -3' miRNA: 3'- cuaCGUGGUCGACGU------GCGCCUa---GGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 195119 | 0.76 | 0.372934 |
Target: 5'- cGUGCGCCcGCggcGCGCGCGGGcUCGCg -3' miRNA: 3'- cUACGUGGuCGa--CGUGCGCCUaGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 34231 | 0.76 | 0.365005 |
Target: 5'- aGGUGCAggAGCUGCACGCGcGGcugCCGCc -3' miRNA: 3'- -CUACGUggUCGACGUGCGC-CUa--GGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 47527 | 0.76 | 0.372934 |
Target: 5'- --gGCACCGGCUGCccuCGCcGAUcCCGCa -3' miRNA: 3'- cuaCGUGGUCGACGu--GCGcCUA-GGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 187858 | 0.76 | 0.365005 |
Target: 5'- -cUGC-CCAGCcGCGCGCGGcucgCCGCu -3' miRNA: 3'- cuACGuGGUCGaCGUGCGCCua--GGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 118715 | 0.74 | 0.485976 |
Target: 5'- uGAUG-GCCAGCUGCGCGUacugGGcgCUGCu -3' miRNA: 3'- -CUACgUGGUCGACGUGCG----CCuaGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 148541 | 0.74 | 0.476683 |
Target: 5'- cGUGCcucgUCGGCUGCGCGCGGcucuuUCUGCu -3' miRNA: 3'- cUACGu---GGUCGACGUGCGCCu----AGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 184034 | 0.73 | 0.523961 |
Target: 5'- --gGCACCGcGCgcaGCGCGCGGucgcgggCCGCg -3' miRNA: 3'- cuaCGUGGU-CGa--CGUGCGCCua-----GGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 141445 | 0.73 | 0.504815 |
Target: 5'- gGggGCGCCGGgaGCgGCGCGGcGUCCGg -3' miRNA: 3'- -CuaCGUGGUCgaCG-UGCGCC-UAGGCg -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 194309 | 0.73 | 0.514352 |
Target: 5'- --aGCGCCAGCgccUGcCGCaGCGGAUCgCGCc -3' miRNA: 3'- cuaCGUGGUCG---AC-GUG-CGCCUAG-GCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 42970 | 0.73 | 0.523961 |
Target: 5'- gGAUGUagGCCAGCUgGUGCGCcaGGAUgCGCa -3' miRNA: 3'- -CUACG--UGGUCGA-CGUGCG--CCUAgGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 114134 | 0.73 | 0.495355 |
Target: 5'- -uUGcCGCCGGCcaggGCGCGCaGGcgCCGCg -3' miRNA: 3'- cuAC-GUGGUCGa---CGUGCG-CCuaGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 184452 | 0.73 | 0.533638 |
Target: 5'- --cGCGCC-GCUGCcgccCGCGGG-CCGCg -3' miRNA: 3'- cuaCGUGGuCGACGu---GCGCCUaGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 195296 | 0.73 | 0.504815 |
Target: 5'- --cGCACC-GCUGCACGCaccgCCGCg -3' miRNA: 3'- cuaCGUGGuCGACGUGCGccuaGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 112701 | 0.72 | 0.582859 |
Target: 5'- --cGCgGCCAGCUuCuCGCGGGUCUGCc -3' miRNA: 3'- cuaCG-UGGUCGAcGuGCGCCUAGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 108215 | 0.72 | 0.592829 |
Target: 5'- --cGCGCCGGCcucGCGCccuGCGGcaAUCCGCu -3' miRNA: 3'- cuaCGUGGUCGa--CGUG---CGCC--UAGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 36914 | 0.72 | 0.553176 |
Target: 5'- cGcgGCGCCGGCcccGCGacCGCGGAggagaaagUCCGCg -3' miRNA: 3'- -CuaCGUGGUCGa--CGU--GCGCCU--------AGGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 58395 | 0.71 | 0.609839 |
Target: 5'- --gGCGCCAGCUGCugGagcacgccaaggugCGGccgCCGCc -3' miRNA: 3'- cuaCGUGGUCGACGugC--------------GCCua-GGCG- -5' |
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10759 | 3' | -57.4 | NC_002794.1 | + | 58734 | 0.71 | 0.656999 |
Target: 5'- --cGCGCCucagcgggcucaacgGGCaGCugGCGGAggagCCGCu -3' miRNA: 3'- cuaCGUGG---------------UCGaCGugCGCCUa---GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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