miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 109344 1.12 0.00164
Target:  5'- aGAUGCACCAGCUGCACGCGGAUCCGCa -3'
miRNA:   3'- -CUACGUGGUCGACGUGCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 193062 0.8 0.225867
Target:  5'- --cGCACCGGCUGCGggccguCGCGGGacagCCGCa -3'
miRNA:   3'- cuaCGUGGUCGACGU------GCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 187858 0.76 0.365005
Target:  5'- -cUGC-CCAGCcGCGCGCGGcucgCCGCu -3'
miRNA:   3'- cuACGuGGUCGaCGUGCGCCua--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 34231 0.76 0.365005
Target:  5'- aGGUGCAggAGCUGCACGCGcGGcugCCGCc -3'
miRNA:   3'- -CUACGUggUCGACGUGCGC-CUa--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 195119 0.76 0.372934
Target:  5'- cGUGCGCCcGCggcGCGCGCGGGcUCGCg -3'
miRNA:   3'- cUACGUGGuCGa--CGUGCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 47527 0.76 0.372934
Target:  5'- --gGCACCGGCUGCccuCGCcGAUcCCGCa -3'
miRNA:   3'- cuaCGUGGUCGACGu--GCGcCUA-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 148541 0.74 0.476683
Target:  5'- cGUGCcucgUCGGCUGCGCGCGGcucuuUCUGCu -3'
miRNA:   3'- cUACGu---GGUCGACGUGCGCCu----AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 118715 0.74 0.485976
Target:  5'- uGAUG-GCCAGCUGCGCGUacugGGcgCUGCu -3'
miRNA:   3'- -CUACgUGGUCGACGUGCG----CCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 114134 0.73 0.495355
Target:  5'- -uUGcCGCCGGCcaggGCGCGCaGGcgCCGCg -3'
miRNA:   3'- cuAC-GUGGUCGa---CGUGCG-CCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 141445 0.73 0.504815
Target:  5'- gGggGCGCCGGgaGCgGCGCGGcGUCCGg -3'
miRNA:   3'- -CuaCGUGGUCgaCG-UGCGCC-UAGGCg -5'
10759 3' -57.4 NC_002794.1 + 195296 0.73 0.504815
Target:  5'- --cGCACC-GCUGCACGCaccgCCGCg -3'
miRNA:   3'- cuaCGUGGuCGACGUGCGccuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 194309 0.73 0.514352
Target:  5'- --aGCGCCAGCgccUGcCGCaGCGGAUCgCGCc -3'
miRNA:   3'- cuaCGUGGUCG---AC-GUG-CGCCUAG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 42970 0.73 0.523961
Target:  5'- gGAUGUagGCCAGCUgGUGCGCcaGGAUgCGCa -3'
miRNA:   3'- -CUACG--UGGUCGA-CGUGCG--CCUAgGCG- -5'
10759 3' -57.4 NC_002794.1 + 184034 0.73 0.523961
Target:  5'- --gGCACCGcGCgcaGCGCGCGGucgcgggCCGCg -3'
miRNA:   3'- cuaCGUGGU-CGa--CGUGCGCCua-----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 184452 0.73 0.533638
Target:  5'- --cGCGCC-GCUGCcgccCGCGGG-CCGCg -3'
miRNA:   3'- cuaCGUGGuCGACGu---GCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 36914 0.72 0.553176
Target:  5'- cGcgGCGCCGGCcccGCGacCGCGGAggagaaagUCCGCg -3'
miRNA:   3'- -CuaCGUGGUCGa--CGU--GCGCCU--------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 112701 0.72 0.582859
Target:  5'- --cGCgGCCAGCUuCuCGCGGGUCUGCc -3'
miRNA:   3'- cuaCG-UGGUCGAcGuGCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 108215 0.72 0.592829
Target:  5'- --cGCGCCGGCcucGCGCccuGCGGcaAUCCGCu -3'
miRNA:   3'- cuaCGUGGUCGa--CGUG---CGCC--UAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 60648 0.71 0.602828
Target:  5'- gGcgGCGCCGGCcacccgGCGCGCGccgCCGCc -3'
miRNA:   3'- -CuaCGUGGUCGa-----CGUGCGCcuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 124239 0.71 0.602828
Target:  5'- aGUGCGCCuGUUccccGCGCGCGGGUagUCGCc -3'
miRNA:   3'- cUACGUGGuCGA----CGUGCGCCUA--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.