miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 58395 0.71 0.609839
Target:  5'- --gGCGCCAGCUGCugGagcacgccaaggugCGGccgCCGCc -3'
miRNA:   3'- cuaCGUGGUCGACGugC--------------GCCua-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 84953 0.71 0.612847
Target:  5'- --aGCGCCcccgGCACGCGGAUCCu- -3'
miRNA:   3'- cuaCGUGGucgaCGUGCGCCUAGGcg -5'
10759 3' -57.4 NC_002794.1 + 72260 0.71 0.612847
Target:  5'- -uUGCcCCAGUUcCGCGCGGAagaagCCGCg -3'
miRNA:   3'- cuACGuGGUCGAcGUGCGCCUa----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 194655 0.71 0.62288
Target:  5'- -cUGCGUCGGCUGCGC-CGGGUCCc- -3'
miRNA:   3'- cuACGUGGUCGACGUGcGCCUAGGcg -5'
10759 3' -57.4 NC_002794.1 + 48708 0.71 0.64296
Target:  5'- --gGC-CCAGUacucgGUGCGCGGAUCCGa -3'
miRNA:   3'- cuaCGuGGUCGa----CGUGCGCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 87812 0.71 0.64296
Target:  5'- uAUGCACCuacuAGCgcgcGUGCGCGuAUCCGCg -3'
miRNA:   3'- cUACGUGG----UCGa---CGUGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 58734 0.71 0.656999
Target:  5'- --cGCGCCucagcgggcucaacgGGCaGCugGCGGAggagCCGCu -3'
miRNA:   3'- cuaCGUGG---------------UCGaCGugCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 189491 0.7 0.660004
Target:  5'- uGUGCAcCCAGCUGgGCaccucguguccgucGCGGAUCaGCg -3'
miRNA:   3'- cUACGU-GGUCGACgUG--------------CGCCUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 94006 0.7 0.663006
Target:  5'- --gGCGCCGGCgGCGggccgGCGGGUuCCGCc -3'
miRNA:   3'- cuaCGUGGUCGaCGUg----CGCCUA-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 37493 0.7 0.663006
Target:  5'- --cGCgACCAGCcGCACGCGcguguGGUCgCGCa -3'
miRNA:   3'- cuaCG-UGGUCGaCGUGCGC-----CUAG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 34863 0.7 0.663006
Target:  5'- --gGCGCC-GCggGCGcCGCGGAcgCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa-CGU-GCGCCUa-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 90772 0.7 0.680967
Target:  5'- --cGCGCC-GCUGCugGUGGAccugacggucgaCCGCg -3'
miRNA:   3'- cuaCGUGGuCGACGugCGCCUa-----------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 129907 0.7 0.682956
Target:  5'- --gGCGCUGGgaGCACGCG-AUUCGCc -3'
miRNA:   3'- cuaCGUGGUCgaCGUGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 57489 0.7 0.682956
Target:  5'- --cGCgACCAGgUGCGCGCGcccgCCGCc -3'
miRNA:   3'- cuaCG-UGGUCgACGUGCGCcua-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 12229 0.7 0.682956
Target:  5'- gGcgGCGCCGGCgGCGCcguccGCGGcgCCGa -3'
miRNA:   3'- -CuaCGUGGUCGaCGUG-----CGCCuaGGCg -5'
10759 3' -57.4 NC_002794.1 + 19527 0.7 0.692875
Target:  5'- --aGCGCCGGC-GCgGCGCGGc-CCGCc -3'
miRNA:   3'- cuaCGUGGUCGaCG-UGCGCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 49471 0.7 0.692875
Target:  5'- cGUG-ACCGGCcGC-CGCGGGUCUGUc -3'
miRNA:   3'- cUACgUGGUCGaCGuGCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 16367 0.7 0.692875
Target:  5'- --cGCACCcGCgUGCACGgcggcCGGGUCCGa -3'
miRNA:   3'- cuaCGUGGuCG-ACGUGC-----GCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 103602 0.7 0.692875
Target:  5'- --gGCAgCGGCgGCACGCGcucuuggaGAUCUGCu -3'
miRNA:   3'- cuaCGUgGUCGaCGUGCGC--------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 181667 0.7 0.702745
Target:  5'- cGGUGUACacguuGgUGUGCGCGGAccgCCGCg -3'
miRNA:   3'- -CUACGUGgu---CgACGUGCGCCUa--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.