miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 118875 0.7 0.706677
Target:  5'- --aGgGCCAGCUGCAggucggcccgguguuCGCGuaGGUCCGUg -3'
miRNA:   3'- cuaCgUGGUCGACGU---------------GCGC--CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 147616 0.7 0.712558
Target:  5'- -cUGCACUGGCagGCGuCGgagaGGGUCCGCu -3'
miRNA:   3'- cuACGUGGUCGa-CGU-GCg---CCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 80538 0.7 0.712558
Target:  5'- --gGCACCGGC-GCcucuucccCGCGGAcccguUCCGCg -3'
miRNA:   3'- cuaCGUGGUCGaCGu-------GCGCCU-----AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 104904 0.7 0.712558
Target:  5'- --gGCGCCGuGCUGCuCGagcaGGcgCCGCg -3'
miRNA:   3'- cuaCGUGGU-CGACGuGCg---CCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 44348 0.69 0.721333
Target:  5'- --gGCGCCGGCgagaccgagaGCGCgGCGGGcgcgacgUCCGCg -3'
miRNA:   3'- cuaCGUGGUCGa---------CGUG-CGCCU-------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 38126 0.69 0.722304
Target:  5'- --cGCGCCAGCUgGgGCGUGGAgUCgaGCa -3'
miRNA:   3'- cuaCGUGGUCGA-CgUGCGCCU-AGg-CG- -5'
10759 3' -57.4 NC_002794.1 + 117018 0.69 0.722304
Target:  5'- --gGUACCAGCcGCGCcacccCGGGUCCGa -3'
miRNA:   3'- cuaCGUGGUCGaCGUGc----GCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 34991 0.69 0.735823
Target:  5'- -cUGCGCCGGCUGCGgGCccggcacuauguacaGcaaccgccuccuGAUCCGCg -3'
miRNA:   3'- cuACGUGGUCGACGUgCG---------------C------------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 151592 0.69 0.741566
Target:  5'- --cGCGCC-GCcGC-CGCGGGcCCGCg -3'
miRNA:   3'- cuaCGUGGuCGaCGuGCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 125199 0.69 0.750118
Target:  5'- -cUGCGCCgugaccaAGCUcGCcUGCGuGGUCCGCg -3'
miRNA:   3'- cuACGUGG-------UCGA-CGuGCGC-CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 33682 0.69 0.751063
Target:  5'- -cUGCGCUcGCUGCGCcuguucgugGCGGGcgagCCGCu -3'
miRNA:   3'- cuACGUGGuCGACGUG---------CGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 58629 0.69 0.760459
Target:  5'- uGGUGCGCCugaucgccacgcAGCUGgGCGaCGGG-CUGCu -3'
miRNA:   3'- -CUACGUGG------------UCGACgUGC-GCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 141307 0.69 0.760459
Target:  5'- --cGCGCCGGCgacgGCAC-CGGcGUCgGCu -3'
miRNA:   3'- cuaCGUGGUCGa---CGUGcGCC-UAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 71032 0.69 0.760459
Target:  5'- cGUGCACCaggAGCgGCACGUcccccGGAagCCGCc -3'
miRNA:   3'- cUACGUGG---UCGaCGUGCG-----CCUa-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 48163 0.69 0.760459
Target:  5'- aGcgGCGCCGcuucacgccGCUGCA-GCGGAaCUGCg -3'
miRNA:   3'- -CuaCGUGGU---------CGACGUgCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 106067 0.68 0.769746
Target:  5'- cGUGgGCC-GCcgGCACGCGGcuuuUCUGCg -3'
miRNA:   3'- cUACgUGGuCGa-CGUGCGCCu---AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 96924 0.68 0.769746
Target:  5'- --gGCGCCGGCgacaGCACGCcgucGGAgucUCCGg -3'
miRNA:   3'- cuaCGUGGUCGa---CGUGCG----CCU---AGGCg -5'
10759 3' -57.4 NC_002794.1 + 113489 0.68 0.769746
Target:  5'- -cUGCAggAGCUcGCGCGCGGccgagagCCGCg -3'
miRNA:   3'- cuACGUggUCGA-CGUGCGCCua-----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 47961 0.68 0.769746
Target:  5'- --gGCGCCGGCUGgGCGaccg-CCGCg -3'
miRNA:   3'- cuaCGUGGUCGACgUGCgccuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 194388 0.68 0.769746
Target:  5'- ---aCACCAGCUGCGCcgccCGGucguucgcGUCCGCc -3'
miRNA:   3'- cuacGUGGUCGACGUGc---GCC--------UAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.