miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 183463 0.66 0.890471
Target:  5'- --gGCGCCcGCccGC-CGCGaGUCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa-CGuGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 123252 0.66 0.889809
Target:  5'- uGUGCcacuuucGCCGGCUGguC-CGGG-CCGCg -3'
miRNA:   3'- cUACG-------UGGUCGACguGcGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 136773 0.66 0.883751
Target:  5'- --cGCGCCAcGCccaGCuCGaGGAUCCGCc -3'
miRNA:   3'- cuaCGUGGU-CGa--CGuGCgCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 195211 0.66 0.883751
Target:  5'- --aGCcccGCCAGCUGCggcagcagcccGCGCGGcGUCaccaGCa -3'
miRNA:   3'- cuaCG---UGGUCGACG-----------UGCGCC-UAGg---CG- -5'
10759 3' -57.4 NC_002794.1 + 114434 0.66 0.883751
Target:  5'- --cGgACCAGCUGCcgcacguCGUGGugcugucgCCGCa -3'
miRNA:   3'- cuaCgUGGUCGACGu------GCGCCua------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 114283 0.66 0.881003
Target:  5'- -cUGCACCAGCcGUuCGCucaggucuccguaGAUCCGCc -3'
miRNA:   3'- cuACGUGGUCGaCGuGCGc------------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 91660 0.66 0.876817
Target:  5'- -cUGCACCugucGGC-GCACGUGGG-CgCGCu -3'
miRNA:   3'- cuACGUGG----UCGaCGUGCGCCUaG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 36673 0.66 0.876817
Target:  5'- -uUGCGCCAGUaGCA-GCcgaagacGGUCCGCg -3'
miRNA:   3'- cuACGUGGUCGaCGUgCGc------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 151782 0.66 0.876817
Target:  5'- --cGCGCC-GCUGCACGCcaGAcgCCGg -3'
miRNA:   3'- cuaCGUGGuCGACGUGCGc-CUa-GGCg -5'
10759 3' -57.4 NC_002794.1 + 67419 0.66 0.876817
Target:  5'- --gGCGCCAGCgucgGCGgCGUGucGcgCCGCu -3'
miRNA:   3'- cuaCGUGGUCGa---CGU-GCGC--CuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 184109 0.66 0.876817
Target:  5'- --cGCGCCAGCgccccgcucgccgGCgucacguagaccgugGCGUucGGAUCCGCc -3'
miRNA:   3'- cuaCGUGGUCGa------------CG---------------UGCG--CCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 31237 0.66 0.876817
Target:  5'- --cGCugUAGCcGaugACGCaGAUCCGCa -3'
miRNA:   3'- cuaCGugGUCGaCg--UGCGcCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 41289 0.66 0.869671
Target:  5'- --gGCGgCGGCUcCgACGCGGG-CCGCg -3'
miRNA:   3'- cuaCGUgGUCGAcG-UGCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 80946 0.66 0.869671
Target:  5'- -cUGCGCCuGCcGCGCcaagcuCGGGUuCCGCg -3'
miRNA:   3'- cuACGUGGuCGaCGUGc-----GCCUA-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 82672 0.66 0.869671
Target:  5'- --cGCGCCGGCggaucGCACGCc-GUUCGCc -3'
miRNA:   3'- cuaCGUGGUCGa----CGUGCGccUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 106999 0.66 0.869671
Target:  5'- gGcgGCGCUGGCcgacgcgacggUGCucacCGCGGcgCCGCu -3'
miRNA:   3'- -CuaCGUGGUCG-----------ACGu---GCGCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 92270 0.66 0.869671
Target:  5'- gGcgGCGCCgGGCgagGCGCGCaaGGUCgGCg -3'
miRNA:   3'- -CuaCGUGG-UCGa--CGUGCGc-CUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 104565 0.66 0.868946
Target:  5'- gGAUGCgguccACCAGCUucagguuguugcgGCACGagugcaGGAUgCGCu -3'
miRNA:   3'- -CUACG-----UGGUCGA-------------CGUGCg-----CCUAgGCG- -5'
10759 3' -57.4 NC_002794.1 + 114871 0.66 0.868946
Target:  5'- --aGCGCCucgagcAGCUGCA-GCGucugcucGGUCCGCu -3'
miRNA:   3'- cuaCGUGG------UCGACGUgCGC-------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 68949 0.66 0.868218
Target:  5'- cGcgGCGCCGGC-GCcucucccuccucCGCGGG-CCGCg -3'
miRNA:   3'- -CuaCGUGGUCGaCGu-----------GCGCCUaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.