miRNA display CGI


Results 41 - 60 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 83207 0.67 0.862321
Target:  5'- --cGCGCCgAGcCUGCACGU-GAUCCucGCg -3'
miRNA:   3'- cuaCGUGG-UC-GACGUGCGcCUAGG--CG- -5'
10759 3' -57.4 NC_002794.1 + 43628 0.67 0.862321
Target:  5'- --gGcCGCCAGgaGCugGUGGAacacgcugCCGCc -3'
miRNA:   3'- cuaC-GUGGUCgaCGugCGCCUa-------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 63150 0.67 0.862321
Target:  5'- cGUGCAcucCCAGCUGCuGCaCGGccgaggCCGCg -3'
miRNA:   3'- cUACGU---GGUCGACG-UGcGCCua----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 125846 0.67 0.862321
Target:  5'- -cUGCgcuGCCGGCUGgACaaGCGGG-CCGUg -3'
miRNA:   3'- cuACG---UGGUCGACgUG--CGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 174198 0.67 0.862321
Target:  5'- --cGUACCAGUUGCAguccgguuUGCGGuggaCGCg -3'
miRNA:   3'- cuaCGUGGUCGACGU--------GCGCCuag-GCG- -5'
10759 3' -57.4 NC_002794.1 + 111254 0.67 0.862321
Target:  5'- --aGCACCucGGCcgGCAggaUGCGGA-CCGCc -3'
miRNA:   3'- cuaCGUGG--UCGa-CGU---GCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 189770 0.67 0.854771
Target:  5'- cGGUGCaccGCCAGCcGCgggAUGCGGAaaucgCCGUc -3'
miRNA:   3'- -CUACG---UGGUCGaCG---UGCGCCUa----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 119090 0.67 0.854771
Target:  5'- --gGCGcCCGGUUGCugGUGGGcgUCCa- -3'
miRNA:   3'- cuaCGU-GGUCGACGugCGCCU--AGGcg -5'
10759 3' -57.4 NC_002794.1 + 99596 0.67 0.854771
Target:  5'- --cGCGgCGGCgGCGCGCGcucGcgCCGCc -3'
miRNA:   3'- cuaCGUgGUCGaCGUGCGC---CuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 141529 0.67 0.854771
Target:  5'- -cUGgGCgGGCUGCucgccgaagGCGCGaAUCCGCc -3'
miRNA:   3'- cuACgUGgUCGACG---------UGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 37407 0.67 0.854771
Target:  5'- --aGCGCCcGCUGCAgcCGGuccagcgccGUCCGCa -3'
miRNA:   3'- cuaCGUGGuCGACGUgcGCC---------UAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 12608 0.67 0.854771
Target:  5'- -cUGCGCCAcCaGCGCGUcuGGggCCGCu -3'
miRNA:   3'- cuACGUGGUcGaCGUGCG--CCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 118638 0.67 0.854005
Target:  5'- -cUGCGCCAGCU-CG-GCGGccagcucGUCCGUg -3'
miRNA:   3'- cuACGUGGUCGAcGUgCGCC-------UAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 106367 0.67 0.847027
Target:  5'- --gGCGCCGGUU-CGCGCGGAgg-GCa -3'
miRNA:   3'- cuaCGUGGUCGAcGUGCGCCUaggCG- -5'
10759 3' -57.4 NC_002794.1 + 32314 0.67 0.847027
Target:  5'- --cGCGCCGGCcGCgGC-CGGAgacaagcccUCCGCg -3'
miRNA:   3'- cuaCGUGGUCGaCG-UGcGCCU---------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 153408 0.67 0.847027
Target:  5'- -cUGuCGCgAGCgccGCGCGCGGAgCCGa -3'
miRNA:   3'- cuAC-GUGgUCGa--CGUGCGCCUaGGCg -5'
10759 3' -57.4 NC_002794.1 + 55624 0.67 0.847027
Target:  5'- cGUGCacGCUGGCcaGCACGCGGG-CCGg -3'
miRNA:   3'- cUACG--UGGUCGa-CGUGCGCCUaGGCg -5'
10759 3' -57.4 NC_002794.1 + 123878 0.67 0.847027
Target:  5'- aGcgGguCCAGCUGC-UGCGu-UCCGCc -3'
miRNA:   3'- -CuaCguGGUCGACGuGCGCcuAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 121142 0.67 0.846242
Target:  5'- gGGUGCACauccgaGGCUGCgaagGCguucagaucggcaGCGGGcUCCGCa -3'
miRNA:   3'- -CUACGUGg-----UCGACG----UG-------------CGCCU-AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 101749 0.67 0.839095
Target:  5'- --aGCuACCGGUUcGUGCGCGaGAacgUCCGCg -3'
miRNA:   3'- cuaCG-UGGUCGA-CGUGCGC-CU---AGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.