miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 111741 0.67 0.839095
Target:  5'- --cGCGCUcgucgAGCUGgcgcCGCGCGGcgCCGUc -3'
miRNA:   3'- cuaCGUGG-----UCGAC----GUGCGCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 101749 0.67 0.839095
Target:  5'- --aGCuACCGGUUcGUGCGCGaGAacgUCCGCg -3'
miRNA:   3'- cuaCG-UGGUCGA-CGUGCGC-CU---AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 130148 0.67 0.839095
Target:  5'- cGcgGCGCgAGCgcgggaucacGCGCGCGaGAgccgCCGCa -3'
miRNA:   3'- -CuaCGUGgUCGa---------CGUGCGC-CUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 100730 0.67 0.830982
Target:  5'- --cGCuACCuGCUgacGCGCGCGGAg-CGCg -3'
miRNA:   3'- cuaCG-UGGuCGA---CGUGCGCCUagGCG- -5'
10759 3' -57.4 NC_002794.1 + 103454 0.67 0.830982
Target:  5'- --aGCugCGGCUGguUGaUGGAcagCCGCa -3'
miRNA:   3'- cuaCGugGUCGACguGC-GCCUa--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 148205 0.67 0.830982
Target:  5'- --gGCGCCGGC-GCGCGCucGAUCgGUc -3'
miRNA:   3'- cuaCGUGGUCGaCGUGCGc-CUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 113877 0.67 0.830161
Target:  5'- --cGCGCuCGGCcgcgGCGCGCGucggcgcGGUCUGCa -3'
miRNA:   3'- cuaCGUG-GUCGa---CGUGCGC-------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 112066 0.67 0.822695
Target:  5'- --gGCGCCAGCUGCAgccgagucaGCaGGUCCcguuGCg -3'
miRNA:   3'- cuaCGUGGUCGACGUg--------CGcCUAGG----CG- -5'
10759 3' -57.4 NC_002794.1 + 37742 0.67 0.822695
Target:  5'- --cGcCGCCGGCggcgGCGCgGCGGcgCCGg -3'
miRNA:   3'- cuaC-GUGGUCGa---CGUG-CGCCuaGGCg -5'
10759 3' -57.4 NC_002794.1 + 192402 0.67 0.822695
Target:  5'- --cGCGCCGGg-GUagucgaaacgccGCGaCGGGUCCGCg -3'
miRNA:   3'- cuaCGUGGUCgaCG------------UGC-GCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 32246 0.67 0.820177
Target:  5'- aGGUcCugCAGCUGCugGCGcucgacggccggccGAUCgGCg -3'
miRNA:   3'- -CUAcGugGUCGACGugCGC--------------CUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 113171 0.68 0.814242
Target:  5'- --cGCGCgGGCggcgGCGguCGCGGAggcgccUCCGCc -3'
miRNA:   3'- cuaCGUGgUCGa---CGU--GCGCCU------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 58667 0.68 0.814242
Target:  5'- -cUGCAgCCGGCcgUGCACGCGcacuaCCGCc -3'
miRNA:   3'- cuACGU-GGUCG--ACGUGCGCcua--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 63710 0.68 0.814242
Target:  5'- --gGCGCCGGC-GC-CGCcGGA-CCGCc -3'
miRNA:   3'- cuaCGUGGUCGaCGuGCG-CCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 16279 0.68 0.809093
Target:  5'- --cGCGCCc-CUGUugGCGGAgucuagccuggcggCCGCg -3'
miRNA:   3'- cuaCGUGGucGACGugCGCCUa-------------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 150292 0.68 0.805629
Target:  5'- --cGCGCCGGUguggugGCA-GCGGAUcaccggCCGCg -3'
miRNA:   3'- cuaCGUGGUCGa-----CGUgCGCCUA------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 11240 0.68 0.805629
Target:  5'- cGAUGC-UUAGCUGCACGUacgagGGGUCgGg -3'
miRNA:   3'- -CUACGuGGUCGACGUGCG-----CCUAGgCg -5'
10759 3' -57.4 NC_002794.1 + 10379 0.68 0.803888
Target:  5'- --cGCACUAGCcgacgaucgaggGgAgGCGGAUCUGCa -3'
miRNA:   3'- cuaCGUGGUCGa-----------CgUgCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 77654 0.68 0.796865
Target:  5'- ---cCACCuguGCgGCcCGCGGGUCUGCg -3'
miRNA:   3'- cuacGUGGu--CGaCGuGCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 186865 0.68 0.796865
Target:  5'- cGUGCAgCAGCaGCGggcucggcuCGCGGuccggcGUCCGCa -3'
miRNA:   3'- cUACGUgGUCGaCGU---------GCGCC------UAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.