miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 867 0.68 0.769746
Target:  5'- --cGCGCCcgcgaggcggucGGCgUGCGCGCGGG-CCGg -3'
miRNA:   3'- cuaCGUGG------------UCG-ACGUGCGCCUaGGCg -5'
10759 3' -57.4 NC_002794.1 + 10379 0.68 0.803888
Target:  5'- --cGCACUAGCcgacgaucgaggGgAgGCGGAUCUGCa -3'
miRNA:   3'- cuaCGUGGUCGa-----------CgUgCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 11240 0.68 0.805629
Target:  5'- cGAUGC-UUAGCUGCACGUacgagGGGUCgGg -3'
miRNA:   3'- -CUACGuGGUCGACGUGCG-----CCUAGgCg -5'
10759 3' -57.4 NC_002794.1 + 12229 0.7 0.682956
Target:  5'- gGcgGCGCCGGCgGCGCcguccGCGGcgCCGa -3'
miRNA:   3'- -CuaCGUGGUCGaCGUG-----CGCCuaGGCg -5'
10759 3' -57.4 NC_002794.1 + 12608 0.67 0.854771
Target:  5'- -cUGCGCCAcCaGCGCGUcuGGggCCGCu -3'
miRNA:   3'- cuACGUGGUcGaCGUGCG--CCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 16279 0.68 0.809093
Target:  5'- --cGCGCCc-CUGUugGCGGAgucuagccuggcggCCGCg -3'
miRNA:   3'- cuaCGUGGucGACGugCGCCUa-------------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 16367 0.7 0.692875
Target:  5'- --cGCACCcGCgUGCACGgcggcCGGGUCCGa -3'
miRNA:   3'- cuaCGUGGuCG-ACGUGC-----GCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 19527 0.7 0.692875
Target:  5'- --aGCGCCGGC-GCgGCGCGGc-CCGCc -3'
miRNA:   3'- cuaCGUGGUCGaCG-UGCGCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 30698 0.68 0.78616
Target:  5'- cGUGCacguuccGCCGGUUGUACGCcaucaucGGAcUCCGCc -3'
miRNA:   3'- cUACG-------UGGUCGACGUGCG-------CCU-AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 31237 0.66 0.876817
Target:  5'- --cGCugUAGCcGaugACGCaGAUCCGCa -3'
miRNA:   3'- cuaCGugGUCGaCg--UGCGcCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 32246 0.67 0.820177
Target:  5'- aGGUcCugCAGCUGCugGCGcucgacggccggccGAUCgGCg -3'
miRNA:   3'- -CUAcGugGUCGACGugCGC--------------CUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 32314 0.67 0.847027
Target:  5'- --cGCGCCGGCcGCgGC-CGGAgacaagcccUCCGCg -3'
miRNA:   3'- cuaCGUGGUCGaCG-UGcGCCU---------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 33134 0.68 0.787957
Target:  5'- cGAUcCACCAGgUGC-UGCGGGacccgaccguguUCCGCa -3'
miRNA:   3'- -CUAcGUGGUCgACGuGCGCCU------------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 33682 0.69 0.751063
Target:  5'- -cUGCGCUcGCUGCGCcuguucgugGCGGGcgagCCGCu -3'
miRNA:   3'- cuACGUGGuCGACGUG---------CGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 34231 0.76 0.365005
Target:  5'- aGGUGCAggAGCUGCACGCGcGGcugCCGCc -3'
miRNA:   3'- -CUACGUggUCGACGUGCGC-CUa--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 34863 0.7 0.663006
Target:  5'- --gGCGCC-GCggGCGcCGCGGAcgCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa-CGU-GCGCCUa-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 34991 0.69 0.735823
Target:  5'- -cUGCGCCGGCUGCGgGCccggcacuauguacaGcaaccgccuccuGAUCCGCg -3'
miRNA:   3'- cuACGUGGUCGACGUgCG---------------C------------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 36346 0.66 0.896973
Target:  5'- --aGCAacCCGGCgUGCGCGgccacCGGGUgCGCg -3'
miRNA:   3'- cuaCGU--GGUCG-ACGUGC-----GCCUAgGCG- -5'
10759 3' -57.4 NC_002794.1 + 36576 0.68 0.778915
Target:  5'- --cGCGCC-GCcgaGCAgGCGG-UCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa--CGUgCGCCuAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 36673 0.66 0.876817
Target:  5'- -uUGCGCCAGUaGCA-GCcgaagacGGUCCGCg -3'
miRNA:   3'- cuACGUGGUCGaCGUgCGc------CUAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.