miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 36914 0.72 0.553176
Target:  5'- cGcgGCGCCGGCcccGCGacCGCGGAggagaaagUCCGCg -3'
miRNA:   3'- -CuaCGUGGUCGa--CGU--GCGCCU--------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 37407 0.67 0.854771
Target:  5'- --aGCGCCcGCUGCAgcCGGuccagcgccGUCCGCa -3'
miRNA:   3'- cuaCGUGGuCGACGUgcGCC---------UAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 37493 0.7 0.663006
Target:  5'- --cGCgACCAGCcGCACGCGcguguGGUCgCGCa -3'
miRNA:   3'- cuaCG-UGGUCGaCGUGCGC-----CUAG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 37742 0.67 0.822695
Target:  5'- --cGcCGCCGGCggcgGCGCgGCGGcgCCGg -3'
miRNA:   3'- cuaC-GUGGUCGa---CGUG-CGCCuaGGCg -5'
10759 3' -57.4 NC_002794.1 + 38126 0.69 0.722304
Target:  5'- --cGCGCCAGCUgGgGCGUGGAgUCgaGCa -3'
miRNA:   3'- cuaCGUGGUCGA-CgUGCGCCU-AGg-CG- -5'
10759 3' -57.4 NC_002794.1 + 41289 0.66 0.869671
Target:  5'- --gGCGgCGGCUcCgACGCGGG-CCGCg -3'
miRNA:   3'- cuaCGUgGUCGAcG-UGCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 42970 0.73 0.523961
Target:  5'- gGAUGUagGCCAGCUgGUGCGCcaGGAUgCGCa -3'
miRNA:   3'- -CUACG--UGGUCGA-CGUGCG--CCUAgGCG- -5'
10759 3' -57.4 NC_002794.1 + 43242 0.66 0.893098
Target:  5'- aGcgGCACCGGCcggaacgccggguggUaGCAcuCGCaGAUCCGCu -3'
miRNA:   3'- -CuaCGUGGUCG---------------A-CGU--GCGcCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 43628 0.67 0.862321
Target:  5'- --gGcCGCCAGgaGCugGUGGAacacgcugCCGCc -3'
miRNA:   3'- cuaC-GUGGUCgaCGugCGCCUa-------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 44348 0.69 0.721333
Target:  5'- --gGCGCCGGCgagaccgagaGCGCgGCGGGcgcgacgUCCGCg -3'
miRNA:   3'- cuaCGUGGUCGa---------CGUG-CGCCU-------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 47527 0.76 0.372934
Target:  5'- --gGCACCGGCUGCccuCGCcGAUcCCGCa -3'
miRNA:   3'- cuaCGUGGUCGACGu--GCGcCUA-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 47961 0.68 0.769746
Target:  5'- --gGCGCCGGCUGgGCGaccg-CCGCg -3'
miRNA:   3'- cuaCGUGGUCGACgUGCgccuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 48163 0.69 0.760459
Target:  5'- aGcgGCGCCGcuucacgccGCUGCA-GCGGAaCUGCg -3'
miRNA:   3'- -CuaCGUGGU---------CGACGUgCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 48708 0.71 0.64296
Target:  5'- --gGC-CCAGUacucgGUGCGCGGAUCCGa -3'
miRNA:   3'- cuaCGuGGUCGa----CGUGCGCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 49471 0.7 0.692875
Target:  5'- cGUG-ACCGGCcGC-CGCGGGUCUGUc -3'
miRNA:   3'- cUACgUGGUCGaCGuGCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 52106 0.66 0.890471
Target:  5'- cGUGCugCAGCUGCACccguucuuucUGGAagUGCg -3'
miRNA:   3'- cUACGugGUCGACGUGc---------GCCUagGCG- -5'
10759 3' -57.4 NC_002794.1 + 55624 0.67 0.847027
Target:  5'- cGUGCacGCUGGCcaGCACGCGGG-CCGg -3'
miRNA:   3'- cUACG--UGGUCGa-CGUGCGCCUaGGCg -5'
10759 3' -57.4 NC_002794.1 + 57136 0.66 0.893098
Target:  5'- uGGUGCACaacuuccugcucacgCuGCUGCGCaaGGcgCCGCc -3'
miRNA:   3'- -CUACGUG---------------GuCGACGUGcgCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 57489 0.7 0.682956
Target:  5'- --cGCgACCAGgUGCGCGCGcccgCCGCc -3'
miRNA:   3'- cuaCG-UGGUCgACGUGCGCcua-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 58395 0.71 0.609839
Target:  5'- --gGCGCCAGCUGCugGagcacgccaaggugCGGccgCCGCc -3'
miRNA:   3'- cuaCGUGGUCGACGugC--------------GCCua-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.