miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 58629 0.69 0.760459
Target:  5'- uGGUGCGCCugaucgccacgcAGCUGgGCGaCGGG-CUGCu -3'
miRNA:   3'- -CUACGUGG------------UCGACgUGC-GCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 58667 0.68 0.814242
Target:  5'- -cUGCAgCCGGCcgUGCACGCGcacuaCCGCc -3'
miRNA:   3'- cuACGU-GGUCG--ACGUGCGCcua--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 58734 0.71 0.656999
Target:  5'- --cGCGCCucagcgggcucaacgGGCaGCugGCGGAggagCCGCu -3'
miRNA:   3'- cuaCGUGG---------------UCGaCGugCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 59071 0.66 0.890471
Target:  5'- -cUGCACCucaagaccCUGCugGUGGAgcucuucuaCCGCg -3'
miRNA:   3'- cuACGUGGuc------GACGugCGCCUa--------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 60420 0.66 0.896973
Target:  5'- --cGCGCCAaCcGCACGCucuUCCGCa -3'
miRNA:   3'- cuaCGUGGUcGaCGUGCGccuAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 60648 0.71 0.602828
Target:  5'- gGcgGCGCCGGCcacccgGCGCGCGccgCCGCc -3'
miRNA:   3'- -CuaCGUGGUCGa-----CGUGCGCcuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 61137 0.68 0.778004
Target:  5'- --cGCGCCccuGCUGCcgcccgaccccgaGCGCGcGGUCCGg -3'
miRNA:   3'- cuaCGUGGu--CGACG-------------UGCGC-CUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 62490 0.68 0.778915
Target:  5'- --aGCGCgAGUggacgGCGgGCGGcgCCGCc -3'
miRNA:   3'- cuaCGUGgUCGa----CGUgCGCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 63079 0.68 0.787957
Target:  5'- -cUGgGCCGGCUGUacuucaGCGCGcugCCGCa -3'
miRNA:   3'- cuACgUGGUCGACG------UGCGCcuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 63150 0.67 0.862321
Target:  5'- cGUGCAcucCCAGCUGCuGCaCGGccgaggCCGCg -3'
miRNA:   3'- cUACGU---GGUCGACG-UGcGCCua----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 63710 0.68 0.814242
Target:  5'- --gGCGCCGGC-GC-CGCcGGA-CCGCc -3'
miRNA:   3'- cuaCGUGGUCGaCGuGCG-CCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 67419 0.66 0.876817
Target:  5'- --gGCGCCAGCgucgGCGgCGUGucGcgCCGCu -3'
miRNA:   3'- cuaCGUGGUCGa---CGU-GCGC--CuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 68949 0.66 0.868218
Target:  5'- cGcgGCGCCGGC-GCcucucccuccucCGCGGG-CCGCg -3'
miRNA:   3'- -CuaCGUGGUCGaCGu-----------GCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 71032 0.69 0.760459
Target:  5'- cGUGCACCaggAGCgGCACGUcccccGGAagCCGCc -3'
miRNA:   3'- cUACGUGG---UCGaCGUGCG-----CCUa-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 72260 0.71 0.612847
Target:  5'- -uUGCcCCAGUUcCGCGCGGAagaagCCGCg -3'
miRNA:   3'- cuACGuGGUCGAcGUGCGCCUa----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 77131 0.66 0.903252
Target:  5'- --cGgACCAGCUgGCcgaagACGCGGAg-CGCg -3'
miRNA:   3'- cuaCgUGGUCGA-CG-----UGCGCCUagGCG- -5'
10759 3' -57.4 NC_002794.1 + 77654 0.68 0.796865
Target:  5'- ---cCACCuguGCgGCcCGCGGGUCUGCg -3'
miRNA:   3'- cuacGUGGu--CGaCGuGCGCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 77876 0.66 0.903252
Target:  5'- -uUGCugCAGCUGCuccCGCccGUaCCGCc -3'
miRNA:   3'- cuACGugGUCGACGu--GCGccUA-GGCG- -5'
10759 3' -57.4 NC_002794.1 + 80538 0.7 0.712558
Target:  5'- --gGCACCGGC-GCcucuucccCGCGGAcccguUCCGCg -3'
miRNA:   3'- cuaCGUGGUCGaCGu-------GCGCCU-----AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 80946 0.66 0.869671
Target:  5'- -cUGCGCCuGCcGCGCcaagcuCGGGUuCCGCg -3'
miRNA:   3'- cuACGUGGuCGaCGUGc-----GCCUA-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.