miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 195296 0.73 0.504815
Target:  5'- --cGCACC-GCUGCACGCaccgCCGCg -3'
miRNA:   3'- cuaCGUGGuCGACGUGCGccuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 195211 0.66 0.883751
Target:  5'- --aGCcccGCCAGCUGCggcagcagcccGCGCGGcGUCaccaGCa -3'
miRNA:   3'- cuaCG---UGGUCGACG-----------UGCGCC-UAGg---CG- -5'
10759 3' -57.4 NC_002794.1 + 195119 0.76 0.372934
Target:  5'- cGUGCGCCcGCggcGCGCGCGGGcUCGCg -3'
miRNA:   3'- cUACGUGGuCGa--CGUGCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 194655 0.71 0.62288
Target:  5'- -cUGCGUCGGCUGCGC-CGGGUCCc- -3'
miRNA:   3'- cuACGUGGUCGACGUGcGCCUAGGcg -5'
10759 3' -57.4 NC_002794.1 + 194388 0.68 0.769746
Target:  5'- ---aCACCAGCUGCGCcgccCGGucguucgcGUCCGCc -3'
miRNA:   3'- cuacGUGGUCGACGUGc---GCC--------UAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 194309 0.73 0.514352
Target:  5'- --aGCGCCAGCgccUGcCGCaGCGGAUCgCGCc -3'
miRNA:   3'- cuaCGUGGUCG---AC-GUG-CGCCUAG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 193062 0.8 0.225867
Target:  5'- --cGCACCGGCUGCGggccguCGCGGGacagCCGCa -3'
miRNA:   3'- cuaCGUGGUCGACGU------GCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 192402 0.67 0.822695
Target:  5'- --cGCGCCGGg-GUagucgaaacgccGCGaCGGGUCCGCg -3'
miRNA:   3'- cuaCGUGGUCgaCG------------UGC-GCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 191042 0.68 0.796865
Target:  5'- --cGCACCAGUUGCcCGgGGcgCC-Ca -3'
miRNA:   3'- cuaCGUGGUCGACGuGCgCCuaGGcG- -5'
10759 3' -57.4 NC_002794.1 + 189770 0.67 0.854771
Target:  5'- cGGUGCaccGCCAGCcGCgggAUGCGGAaaucgCCGUc -3'
miRNA:   3'- -CUACG---UGGUCGaCG---UGCGCCUa----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 189491 0.7 0.660004
Target:  5'- uGUGCAcCCAGCUGgGCaccucguguccgucGCGGAUCaGCg -3'
miRNA:   3'- cUACGU-GGUCGACgUG--------------CGCCUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 187858 0.76 0.365005
Target:  5'- -cUGC-CCAGCcGCGCGCGGcucgCCGCu -3'
miRNA:   3'- cuACGuGGUCGaCGUGCGCCua--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 186865 0.68 0.796865
Target:  5'- cGUGCAgCAGCaGCGggcucggcuCGCGGuccggcGUCCGCa -3'
miRNA:   3'- cUACGUgGUCGaCGU---------GCGCC------UAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 185027 0.66 0.903252
Target:  5'- cGGUG-ACCAGCUccaaguacggcaGCAacaGCGuGGUCUGCa -3'
miRNA:   3'- -CUACgUGGUCGA------------CGUg--CGC-CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 184452 0.73 0.533638
Target:  5'- --cGCGCC-GCUGCcgccCGCGGG-CCGCg -3'
miRNA:   3'- cuaCGUGGuCGACGu---GCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 184109 0.66 0.876817
Target:  5'- --cGCGCCAGCgccccgcucgccgGCgucacguagaccgugGCGUucGGAUCCGCc -3'
miRNA:   3'- cuaCGUGGUCGa------------CG---------------UGCG--CCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 184034 0.73 0.523961
Target:  5'- --gGCACCGcGCgcaGCGCGCGGucgcgggCCGCg -3'
miRNA:   3'- cuaCGUGGU-CGa--CGUGCGCCua-----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 183692 0.66 0.903252
Target:  5'- --aGCGCCcGCcGCGCGCGG--CgGCa -3'
miRNA:   3'- cuaCGUGGuCGaCGUGCGCCuaGgCG- -5'
10759 3' -57.4 NC_002794.1 + 183463 0.66 0.890471
Target:  5'- --gGCGCCcGCccGC-CGCGaGUCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa-CGuGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 182091 0.66 0.890471
Target:  5'- --cGCcaGCCAGCguucuucGCGguaGCGGAUCCGg -3'
miRNA:   3'- cuaCG--UGGUCGa------CGUg--CGCCUAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.