miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 181667 0.7 0.702745
Target:  5'- cGGUGUACacguuGgUGUGCGCGGAccgCCGCg -3'
miRNA:   3'- -CUACGUGgu---CgACGUGCGCCUa--GGCG- -5'
10759 3' -57.4 NC_002794.1 + 180154 0.66 0.896973
Target:  5'- --cGCAgCAGCaGUugGUGGGgauagCCGUg -3'
miRNA:   3'- cuaCGUgGUCGaCGugCGCCUa----GGCG- -5'
10759 3' -57.4 NC_002794.1 + 174198 0.67 0.862321
Target:  5'- --cGUACCAGUUGCAguccgguuUGCGGuggaCGCg -3'
miRNA:   3'- cuaCGUGGUCGACGU--------GCGCCuag-GCG- -5'
10759 3' -57.4 NC_002794.1 + 153408 0.67 0.847027
Target:  5'- -cUGuCGCgAGCgccGCGCGCGGAgCCGa -3'
miRNA:   3'- cuAC-GUGgUCGa--CGUGCGCCUaGGCg -5'
10759 3' -57.4 NC_002794.1 + 153362 0.68 0.796865
Target:  5'- cGcgGC-CCGGCUGCGCGCccucguggucGAUCUGUc -3'
miRNA:   3'- -CuaCGuGGUCGACGUGCGc---------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 151782 0.66 0.876817
Target:  5'- --cGCGCC-GCUGCACGCcaGAcgCCGg -3'
miRNA:   3'- cuaCGUGGuCGACGUGCGc-CUa-GGCg -5'
10759 3' -57.4 NC_002794.1 + 151592 0.69 0.741566
Target:  5'- --cGCGCC-GCcGC-CGCGGGcCCGCg -3'
miRNA:   3'- cuaCGUGGuCGaCGuGCGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 150292 0.68 0.805629
Target:  5'- --cGCGCCGGUguggugGCA-GCGGAUcaccggCCGCg -3'
miRNA:   3'- cuaCGUGGUCGa-----CGUgCGCCUA------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 148797 0.68 0.779825
Target:  5'- --cGCACCGucGCcgaGCACGCGGAgaucuggagacugccCCGCg -3'
miRNA:   3'- cuaCGUGGU--CGa--CGUGCGCCUa--------------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 148541 0.74 0.476683
Target:  5'- cGUGCcucgUCGGCUGCGCGCGGcucuuUCUGCu -3'
miRNA:   3'- cUACGu---GGUCGACGUGCGCCu----AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 148205 0.67 0.830982
Target:  5'- --gGCGCCGGC-GCGCGCucGAUCgGUc -3'
miRNA:   3'- cuaCGUGGUCGaCGUGCGc-CUAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 147616 0.7 0.712558
Target:  5'- -cUGCACUGGCagGCGuCGgagaGGGUCCGCu -3'
miRNA:   3'- cuACGUGGUCGa-CGU-GCg---CCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 144819 0.67 0.839095
Target:  5'- --gGCGuCCG--UGCACGCGGAcgagCCGCu -3'
miRNA:   3'- cuaCGU-GGUcgACGUGCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 141529 0.67 0.854771
Target:  5'- -cUGgGCgGGCUGCucgccgaagGCGCGaAUCCGCc -3'
miRNA:   3'- cuACgUGgUCGACG---------UGCGCcUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 141445 0.73 0.504815
Target:  5'- gGggGCGCCGGgaGCgGCGCGGcGUCCGg -3'
miRNA:   3'- -CuaCGUGGUCgaCG-UGCGCC-UAGGCg -5'
10759 3' -57.4 NC_002794.1 + 141307 0.69 0.760459
Target:  5'- --cGCGCCGGCgacgGCAC-CGGcGUCgGCu -3'
miRNA:   3'- cuaCGUGGUCGa---CGUGcGCC-UAGgCG- -5'
10759 3' -57.4 NC_002794.1 + 139469 0.66 0.893098
Target:  5'- cGUGCGCCAGgacggugguguagaUGgGCGCGGGcgcgCUGCa -3'
miRNA:   3'- cUACGUGGUCg-------------ACgUGCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 136773 0.66 0.883751
Target:  5'- --cGCGCCAcGCccaGCuCGaGGAUCCGCc -3'
miRNA:   3'- cuaCGUGGU-CGa--CGuGCgCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 130148 0.67 0.839095
Target:  5'- cGcgGCGCgAGCgcgggaucacGCGCGCGaGAgccgCCGCa -3'
miRNA:   3'- -CuaCGUGgUCGa---------CGUGCGC-CUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 129907 0.7 0.682956
Target:  5'- --gGCGCUGGgaGCACGCG-AUUCGCc -3'
miRNA:   3'- cuaCGUGGUCgaCGUGCGCcUAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.