miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 3' -57.4 NC_002794.1 + 99698 0.66 0.903252
Target:  5'- --cGCGCUGGC-GC-CGCGGAuguucuUUCGCg -3'
miRNA:   3'- cuaCGUGGUCGaCGuGCGCCU------AGGCG- -5'
10759 3' -57.4 NC_002794.1 + 90942 0.66 0.903252
Target:  5'- cGUGgGCgGGCUGUGCGCcgaggcccGGGcCCGCu -3'
miRNA:   3'- cUACgUGgUCGACGUGCG--------CCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 77131 0.66 0.903252
Target:  5'- --cGgACCAGCUgGCcgaagACGCGGAg-CGCg -3'
miRNA:   3'- cuaCgUGGUCGA-CG-----UGCGCCUagGCG- -5'
10759 3' -57.4 NC_002794.1 + 124958 0.66 0.903252
Target:  5'- uGGUGCuggAGCUGCucaaGUGGAUCgCGCc -3'
miRNA:   3'- -CUACGuggUCGACGug--CGCCUAG-GCG- -5'
10759 3' -57.4 NC_002794.1 + 185027 0.66 0.903252
Target:  5'- cGGUG-ACCAGCUccaaguacggcaGCAacaGCGuGGUCUGCa -3'
miRNA:   3'- -CUACgUGGUCGA------------CGUg--CGC-CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 36346 0.66 0.896973
Target:  5'- --aGCAacCCGGCgUGCGCGgccacCGGGUgCGCg -3'
miRNA:   3'- cuaCGU--GGUCG-ACGUGC-----GCCUAgGCG- -5'
10759 3' -57.4 NC_002794.1 + 57136 0.66 0.893098
Target:  5'- uGGUGCACaacuuccugcucacgCuGCUGCGCaaGGcgCCGCc -3'
miRNA:   3'- -CUACGUG---------------GuCGACGUGcgCCuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 67419 0.66 0.876817
Target:  5'- --gGCGCCAGCgucgGCGgCGUGucGcgCCGCu -3'
miRNA:   3'- cuaCGUGGUCGa---CGU-GCGC--CuaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 184109 0.66 0.876817
Target:  5'- --cGCGCCAGCgccccgcucgccgGCgucacguagaccgugGCGUucGGAUCCGCc -3'
miRNA:   3'- cuaCGUGGUCGa------------CG---------------UGCG--CCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 114434 0.66 0.883751
Target:  5'- --cGgACCAGCUGCcgcacguCGUGGugcugucgCCGCa -3'
miRNA:   3'- cuaCgUGGUCGACGu------GCGCCua------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 114283 0.66 0.881003
Target:  5'- -cUGCACCAGCcGUuCGCucaggucuccguaGAUCCGCc -3'
miRNA:   3'- cuACGUGGUCGaCGuGCGc------------CUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 31237 0.66 0.876817
Target:  5'- --cGCugUAGCcGaugACGCaGAUCCGCa -3'
miRNA:   3'- cuaCGugGUCGaCg--UGCGcCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 195211 0.66 0.883751
Target:  5'- --aGCcccGCCAGCUGCggcagcagcccGCGCGGcGUCaccaGCa -3'
miRNA:   3'- cuaCG---UGGUCGACG-----------UGCGCC-UAGg---CG- -5'
10759 3' -57.4 NC_002794.1 + 136773 0.66 0.883751
Target:  5'- --cGCGCCAcGCccaGCuCGaGGAUCCGCc -3'
miRNA:   3'- cuaCGUGGU-CGa--CGuGCgCCUAGGCG- -5'
10759 3' -57.4 NC_002794.1 + 59071 0.66 0.890471
Target:  5'- -cUGCACCucaagaccCUGCugGUGGAgcucuucuaCCGCg -3'
miRNA:   3'- cuACGUGGuc------GACGugCGCCUa--------GGCG- -5'
10759 3' -57.4 NC_002794.1 + 52106 0.66 0.890471
Target:  5'- cGUGCugCAGCUGCACccguucuuucUGGAagUGCg -3'
miRNA:   3'- cUACGugGUCGACGUGc---------GCCUagGCG- -5'
10759 3' -57.4 NC_002794.1 + 123252 0.66 0.889809
Target:  5'- uGUGCcacuuucGCCGGCUGguC-CGGG-CCGCg -3'
miRNA:   3'- cUACG-------UGGUCGACguGcGCCUaGGCG- -5'
10759 3' -57.4 NC_002794.1 + 139469 0.66 0.893098
Target:  5'- cGUGCGCCAGgacggugguguagaUGgGCGCGGGcgcgCUGCa -3'
miRNA:   3'- cUACGUGGUCg-------------ACgUGCGCCUa---GGCG- -5'
10759 3' -57.4 NC_002794.1 + 182091 0.66 0.890471
Target:  5'- --cGCcaGCCAGCguucuucGCGguaGCGGAUCCGg -3'
miRNA:   3'- cuaCG--UGGUCGa------CGUg--CGCCUAGGCg -5'
10759 3' -57.4 NC_002794.1 + 183463 0.66 0.890471
Target:  5'- --gGCGCCcGCccGC-CGCGaGUCCGCg -3'
miRNA:   3'- cuaCGUGGuCGa-CGuGCGCcUAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.