miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10759 5' -56.2 NC_002794.1 + 96436 0.66 0.921624
Target:  5'- -cGCUCGAUCUcaacgaGCUGCaGAaagGCUucugGGCu -3'
miRNA:   3'- uuCGAGCUAGA------CGACGcCUa--CGA----CCG- -5'
10759 5' -56.2 NC_002794.1 + 117504 0.66 0.921624
Target:  5'- --cCUCGAUCaGgUGCuGGGUGCgccGGCg -3'
miRNA:   3'- uucGAGCUAGaCgACG-CCUACGa--CCG- -5'
10759 5' -56.2 NC_002794.1 + 138649 0.66 0.915943
Target:  5'- uGAGUccggUCGGUCgauCUGCGGAuuggucUGCgUGGCg -3'
miRNA:   3'- -UUCG----AGCUAGac-GACGCCU------ACG-ACCG- -5'
10759 5' -56.2 NC_002794.1 + 149686 0.66 0.903868
Target:  5'- -cGCUCGA-CUgGCcGCGGggGCcgccUGGCg -3'
miRNA:   3'- uuCGAGCUaGA-CGaCGCCuaCG----ACCG- -5'
10759 5' -56.2 NC_002794.1 + 114642 0.68 0.838384
Target:  5'- gGAGCUCGA---GCUGCcGGUGCUGuucGCg -3'
miRNA:   3'- -UUCGAGCUagaCGACGcCUACGAC---CG- -5'
10759 5' -56.2 NC_002794.1 + 122570 0.68 0.812948
Target:  5'- -cGCgcagCGG-CUGCUGgGGAUgaugaaggacggGCUGGCg -3'
miRNA:   3'- uuCGa---GCUaGACGACgCCUA------------CGACCG- -5'
10759 5' -56.2 NC_002794.1 + 134147 0.69 0.789698
Target:  5'- gAAGCUCGGUCcguguUGCUggccguggccgcGCGGAUggccaccucguaucgGCUGGUg -3'
miRNA:   3'- -UUCGAGCUAG-----ACGA------------CGCCUA---------------CGACCG- -5'
10759 5' -56.2 NC_002794.1 + 50341 0.69 0.767379
Target:  5'- uGGGCUCGGUCaccgGCUccgccaugaccGCGGAgccgGCcGGCa -3'
miRNA:   3'- -UUCGAGCUAGa---CGA-----------CGCCUa---CGaCCG- -5'
10759 5' -56.2 NC_002794.1 + 128970 0.7 0.738518
Target:  5'- -cGCUCGAUCUGgUGCaGAUccgagcgcucuaGCUcGGCg -3'
miRNA:   3'- uuCGAGCUAGACgACGcCUA------------CGA-CCG- -5'
10759 5' -56.2 NC_002794.1 + 122353 0.7 0.727712
Target:  5'- gGAGCaccgaGGUCUGCUacgGCGGcagcuaccugaagGUGCUGGCc -3'
miRNA:   3'- -UUCGag---CUAGACGA---CGCC-------------UACGACCG- -5'
10759 5' -56.2 NC_002794.1 + 20778 0.7 0.688679
Target:  5'- cGAGCaccUCGuguUCaUGCUGUGGGgcaaGCUGGCg -3'
miRNA:   3'- -UUCG---AGCu--AG-ACGACGCCUa---CGACCG- -5'
10759 5' -56.2 NC_002794.1 + 146693 0.71 0.66835
Target:  5'- -cGCUCGAggCcGaCUGCGGGaGCUGGUg -3'
miRNA:   3'- uuCGAGCUa-GaC-GACGCCUaCGACCG- -5'
10759 5' -56.2 NC_002794.1 + 129674 0.78 0.289952
Target:  5'- cAGCgCGAUCUGCUcGCgGGGUGCUGGa -3'
miRNA:   3'- uUCGaGCUAGACGA-CG-CCUACGACCg -5'
10759 5' -56.2 NC_002794.1 + 109378 1.1 0.002536
Target:  5'- uAAGCUCGAUCUGCUGCGGAUGCUGGCg -3'
miRNA:   3'- -UUCGAGCUAGACGACGCCUACGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.