miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 148207 0.66 0.845816
Target:  5'- cGCCggcgcGCGCUcgauCGGUCUccGGUCGGCGu -3'
miRNA:   3'- -CGGaa---CGCGGu---GCCGGA--CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 129060 0.66 0.837979
Target:  5'- cGCgCgacggUGUGUCGCGGCUgg--CGGCGGa -3'
miRNA:   3'- -CG-Ga----ACGCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 32595 0.66 0.837979
Target:  5'- gGCCggggccgGgGCCGgGGCCgggGAUCGGg-- -3'
miRNA:   3'- -CGGaa-----CgCGGUgCCGGa--CUAGCCguc -5'
10760 3' -59.2 NC_002794.1 + 41235 0.66 0.837979
Target:  5'- uCCUcccaCGCCGCGGCCgccGAcgcCGGCGGc -3'
miRNA:   3'- cGGAac--GCGGUGCCGGa--CUa--GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 111418 0.66 0.837979
Target:  5'- aCCguagGCGCggaGCcGCCaGAUCGGCAGu -3'
miRNA:   3'- cGGaa--CGCGg--UGcCGGaCUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 49016 0.66 0.837979
Target:  5'- cGCCgcgGCgGCCGCGGCgUcGUcCGGCGc -3'
miRNA:   3'- -CGGaa-CG-CGGUGCCGgAcUA-GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 56586 0.66 0.833193
Target:  5'- cGCCgcgGCGCCcgccgcCGGCCUccucauggagaacugGAcggCGGCGGa -3'
miRNA:   3'- -CGGaa-CGCGGu-----GCCGGA---------------CUa--GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 66574 0.66 0.829967
Target:  5'- cGCCg-GCGCCgGCGGCagccccgagugCUGAgaaGGCGGa -3'
miRNA:   3'- -CGGaaCGCGG-UGCCG-----------GACUag-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 106221 0.66 0.829967
Target:  5'- aCCgu-CGCCGCGGCCgcgcucgGGUC-GCAGa -3'
miRNA:   3'- cGGaacGCGGUGCCGGa------CUAGcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 57410 0.66 0.829967
Target:  5'- cGCCc-GCGUgGcCGGCgugCUGGUCGGCAc -3'
miRNA:   3'- -CGGaaCGCGgU-GCCG---GACUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 48178 0.66 0.826715
Target:  5'- cGCCgcugcagcggaacUGCGCCaACGGCCggccuucgaGGUagaGGCAGa -3'
miRNA:   3'- -CGGa------------ACGCGG-UGCCGGa--------CUAg--CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 83863 0.66 0.825079
Target:  5'- aGCCgucgucccggucgGCGCgACGGCCccgGGcUCGGCGc -3'
miRNA:   3'- -CGGaa-----------CGCGgUGCCGGa--CU-AGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 68317 0.66 0.821788
Target:  5'- gGCCgacGCGuuCCGCGGCCUGGUgacCGGg-- -3'
miRNA:   3'- -CGGaa-CGC--GGUGCCGGACUA---GCCguc -5'
10760 3' -59.2 NC_002794.1 + 116893 0.66 0.820961
Target:  5'- cGCCg-GCGCCgucuccgGCGGCC-GGUcCGGCGu -3'
miRNA:   3'- -CGGaaCGCGG-------UGCCGGaCUA-GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 112344 0.66 0.819303
Target:  5'- gGCCggcgGCGCCgGCGGCggggcggggagcugCUGGaacUCGGCAc -3'
miRNA:   3'- -CGGaa--CGCGG-UGCCG--------------GACU---AGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 48044 0.66 0.813448
Target:  5'- cGCCgagUGCGUgcugggCACGGCgCUGAUggcCGGcCAGc -3'
miRNA:   3'- -CGGa--ACGCG------GUGCCG-GACUA---GCC-GUC- -5'
10760 3' -59.2 NC_002794.1 + 107515 0.66 0.804954
Target:  5'- uGCCggucGaCGCCgACGGCCgGcgCGGCGc -3'
miRNA:   3'- -CGGaa--C-GCGG-UGCCGGaCuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 143275 0.66 0.804954
Target:  5'- gGCCcgGCGCC--GGCCgcucggGGUCgGGCGGg -3'
miRNA:   3'- -CGGaaCGCGGugCCGGa-----CUAG-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 91265 0.67 0.796314
Target:  5'- cGCCguucgUGgacCGgCGCGGCCUGuacguGUCGGCGc -3'
miRNA:   3'- -CGGa----AC---GCgGUGCCGGAC-----UAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 128164 0.67 0.796314
Target:  5'- cGgCUcGCGCCGCGGacgGGUCGGUg- -3'
miRNA:   3'- -CgGAaCGCGGUGCCggaCUAGCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.