miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 149723 0.68 0.722889
Target:  5'- cGCCUgccuCGCUACGGCgUGccgguggagCGGCGGg -3'
miRNA:   3'- -CGGAac--GCGGUGCCGgACua-------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 145538 0.68 0.722889
Target:  5'- cGCCUcggGCGCCccgaGCGGCCcGAcCGGUu- -3'
miRNA:   3'- -CGGAa--CGCGG----UGCCGGaCUaGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 111873 0.68 0.73241
Target:  5'- gGCCUUGUaGCgCGCGGugaCCUGAUCcagGGCGa -3'
miRNA:   3'- -CGGAACG-CG-GUGCC---GGACUAG---CCGUc -5'
10760 3' -59.2 NC_002794.1 + 188605 0.68 0.731461
Target:  5'- cGCCUUGCGCCGCaGGUgUGcgaaaacGUCucGCGGa -3'
miRNA:   3'- -CGGAACGCGGUG-CCGgAC-------UAGc-CGUC- -5'
10760 3' -59.2 NC_002794.1 + 1615 0.68 0.73241
Target:  5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3'
miRNA:   3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5'
10760 3' -59.2 NC_002794.1 + 1678 0.68 0.73241
Target:  5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3'
miRNA:   3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5'
10760 3' -59.2 NC_002794.1 + 94002 0.68 0.722889
Target:  5'- cGCCg-GCGCCgGCGGCg-GGcCGGCGGg -3'
miRNA:   3'- -CGGaaCGCGG-UGCCGgaCUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 95828 0.68 0.722889
Target:  5'- gGCCgggggagcgGCgGCgGCGGCCgggGAggCGGCGGg -3'
miRNA:   3'- -CGGaa-------CG-CGgUGCCGGa--CUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 50567 0.68 0.713297
Target:  5'- aGCCUguCGaCACGGCgUGcgCGGCGGc -3'
miRNA:   3'- -CGGAacGCgGUGCCGgACuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 107242 0.69 0.63491
Target:  5'- gGCg--GCGUCGCGGaCCUGGccCGGCGGa -3'
miRNA:   3'- -CGgaaCGCGGUGCC-GGACUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 140016 0.69 0.644794
Target:  5'- gGCCgcgGagGCCGCGGCCcccgcGggCGGCGGg -3'
miRNA:   3'- -CGGaa-Cg-CGGUGCCGGa----CuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 185172 0.69 0.63491
Target:  5'- cGCCggcGCGgCGCGGUCggcgcGGUCGGCGc -3'
miRNA:   3'- -CGGaa-CGCgGUGCCGGa----CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 94664 0.69 0.644794
Target:  5'- cGCCggcUGUGCC-CGGCCU---UGGCGGa -3'
miRNA:   3'- -CGGa--ACGCGGuGCCGGAcuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 14652 0.69 0.644794
Target:  5'- cGCCg-GCGCCGCGGCgUcGGUccgacucgCGGCGGc -3'
miRNA:   3'- -CGGaaCGCGGUGCCGgA-CUA--------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 61878 0.69 0.644794
Target:  5'- cGCCgucgucgGCGCCgcGCGGCgaGcgCGGCGa -3'
miRNA:   3'- -CGGaa-----CGCGG--UGCCGgaCuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 75363 0.69 0.644794
Target:  5'- cGCCaccgaccCGCCGCGGCCgg--CGGCGGc -3'
miRNA:   3'- -CGGaac----GCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 185554 0.69 0.664528
Target:  5'- gGCCgcGCGCCcCGcCCUGccgCGGCAGg -3'
miRNA:   3'- -CGGaaCGCGGuGCcGGACua-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 127346 0.69 0.671415
Target:  5'- uGCCgagacgcucgcggcgGCGgCGCGGCCgcucguGUCGGCGGa -3'
miRNA:   3'- -CGGaa-------------CGCgGUGCCGGac----UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 131872 0.7 0.625023
Target:  5'- cUCUUggGCGCCGCGGCCUcaucucGGUCGcgcGCGGg -3'
miRNA:   3'- cGGAA--CGCGGUGCCGGA------CUAGC---CGUC- -5'
10760 3' -59.2 NC_002794.1 + 186395 0.7 0.625023
Target:  5'- aGCCgca-GCCGCGGCCgcaccaGUCGGCGu -3'
miRNA:   3'- -CGGaacgCGGUGCCGGac----UAGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.