Results 1 - 20 of 91 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 108520 | 1.09 | 0.001869 |
Target: 5'- gGCCUUGCGCCACGGCCUGAUCGGCAGc -3' miRNA: 3'- -CGGAACGCGGUGCCGGACUAGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 126371 | 0.81 | 0.149583 |
Target: 5'- cGCCgcugcguggGCGCCGgGGCCUGcgCGGCGGc -3' miRNA: 3'- -CGGaa-------CGCGGUgCCGGACuaGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 70659 | 0.78 | 0.23662 |
Target: 5'- gGCCUcgUGCGCgGCGGCCgccgCGGCGGu -3' miRNA: 3'- -CGGA--ACGCGgUGCCGGacuaGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 98970 | 0.77 | 0.247917 |
Target: 5'- cGCCgucggcgGCGCCGUGGCCucggUGGUCGGCGGc -3' miRNA: 3'- -CGGaa-----CGCGGUGCCGG----ACUAGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 106971 | 0.76 | 0.311168 |
Target: 5'- cGCCUcGCGCgGCGGCCggcaCGGCGGu -3' miRNA: 3'- -CGGAaCGCGgUGCCGGacuaGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 21884 | 0.76 | 0.304325 |
Target: 5'- gGCCgcgggGUGuCCGCGGCCUGcGUCGGUGGu -3' miRNA: 3'- -CGGaa---CGC-GGUGCCGGAC-UAGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 156403 | 0.75 | 0.339702 |
Target: 5'- gGCCg-GCGCCGCGGCCgcggccacGGcCGGCGGg -3' miRNA: 3'- -CGGaaCGCGGUGCCGGa-------CUaGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 146974 | 0.75 | 0.323778 |
Target: 5'- cGCCUgucgcgaggucgGCGCCGcCGGCCgacGUCGGCGGc -3' miRNA: 3'- -CGGAa-----------CGCGGU-GCCGGac-UAGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 150537 | 0.75 | 0.325202 |
Target: 5'- aGCCgggccgGCGCCAUGGCCgucUCGGCGc -3' miRNA: 3'- -CGGaa----CGCGGUGCCGGacuAGCCGUc -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 111640 | 0.74 | 0.402276 |
Target: 5'- cGCCggucggGCGCCGCGGCCg---CGGCc- -3' miRNA: 3'- -CGGaa----CGCGGUGCCGGacuaGCCGuc -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 126291 | 0.74 | 0.362318 |
Target: 5'- uGCUgUGCGCCGCGcGCCUGG-CGGUg- -3' miRNA: 3'- -CGGaACGCGGUGC-CGGACUaGCCGuc -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 101579 | 0.74 | 0.370086 |
Target: 5'- uGCCggcCGCCGCGGCCgGGggGGCGGg -3' miRNA: 3'- -CGGaacGCGGUGCCGGaCUagCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 123568 | 0.74 | 0.402276 |
Target: 5'- cGCCUUcgaGCGCCACGGCCgccgccCGuGCAGc -3' miRNA: 3'- -CGGAA---CGCGGUGCCGGacua--GC-CGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 114194 | 0.73 | 0.439668 |
Target: 5'- cGCagcgGCGCCACGGCCggcgucuccggCGGCAGc -3' miRNA: 3'- -CGgaa-CGCGGUGCCGGacua-------GCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 32255 | 0.73 | 0.44492 |
Target: 5'- aGCUgcugGCGCUcgACGGCCggccGAUCGGCGa -3' miRNA: 3'- -CGGaa--CGCGG--UGCCGGa---CUAGCCGUc -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 17979 | 0.72 | 0.462673 |
Target: 5'- aGCCUgGCGcCCACGGCCgc--CGGCGa -3' miRNA: 3'- -CGGAaCGC-GGUGCCGGacuaGCCGUc -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 69735 | 0.72 | 0.508595 |
Target: 5'- cGCCggaGCGCCACGGCCggcGAcgCcGCGGg -3' miRNA: 3'- -CGGaa-CGCGGUGCCGGa--CUa-GcCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 130668 | 0.72 | 0.489057 |
Target: 5'- gGCCgcggGCuccGCCGCGGCCUcGugggaggcgccguGUCGGCAGa -3' miRNA: 3'- -CGGaa--CG---CGGUGCCGGA-C-------------UAGCCGUC- -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 110625 | 0.72 | 0.480792 |
Target: 5'- aGCCgcgGCGCCGCGGCggcggGGUCGGg-- -3' miRNA: 3'- -CGGaa-CGCGGUGCCGga---CUAGCCguc -5' |
|||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 41949 | 0.71 | 0.518014 |
Target: 5'- cGCCcucgGCGUgCGCGGCCUGGaaggUCGGCu- -3' miRNA: 3'- -CGGaa--CGCG-GUGCCGGACU----AGCCGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home