miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 108520 1.09 0.001869
Target:  5'- gGCCUUGCGCCACGGCCUGAUCGGCAGc -3'
miRNA:   3'- -CGGAACGCGGUGCCGGACUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 126371 0.81 0.149583
Target:  5'- cGCCgcugcguggGCGCCGgGGCCUGcgCGGCGGc -3'
miRNA:   3'- -CGGaa-------CGCGGUgCCGGACuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 70659 0.78 0.23662
Target:  5'- gGCCUcgUGCGCgGCGGCCgccgCGGCGGu -3'
miRNA:   3'- -CGGA--ACGCGgUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 98970 0.77 0.247917
Target:  5'- cGCCgucggcgGCGCCGUGGCCucggUGGUCGGCGGc -3'
miRNA:   3'- -CGGaa-----CGCGGUGCCGG----ACUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 21884 0.76 0.304325
Target:  5'- gGCCgcgggGUGuCCGCGGCCUGcGUCGGUGGu -3'
miRNA:   3'- -CGGaa---CGC-GGUGCCGGAC-UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 106971 0.76 0.311168
Target:  5'- cGCCUcGCGCgGCGGCCggcaCGGCGGu -3'
miRNA:   3'- -CGGAaCGCGgUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 146974 0.75 0.323778
Target:  5'- cGCCUgucgcgaggucgGCGCCGcCGGCCgacGUCGGCGGc -3'
miRNA:   3'- -CGGAa-----------CGCGGU-GCCGGac-UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 150537 0.75 0.325202
Target:  5'- aGCCgggccgGCGCCAUGGCCgucUCGGCGc -3'
miRNA:   3'- -CGGaa----CGCGGUGCCGGacuAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 156403 0.75 0.339702
Target:  5'- gGCCg-GCGCCGCGGCCgcggccacGGcCGGCGGg -3'
miRNA:   3'- -CGGaaCGCGGUGCCGGa-------CUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 126291 0.74 0.362318
Target:  5'- uGCUgUGCGCCGCGcGCCUGG-CGGUg- -3'
miRNA:   3'- -CGGaACGCGGUGC-CGGACUaGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 101579 0.74 0.370086
Target:  5'- uGCCggcCGCCGCGGCCgGGggGGCGGg -3'
miRNA:   3'- -CGGaacGCGGUGCCGGaCUagCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 123568 0.74 0.402276
Target:  5'- cGCCUUcgaGCGCCACGGCCgccgccCGuGCAGc -3'
miRNA:   3'- -CGGAA---CGCGGUGCCGGacua--GC-CGUC- -5'
10760 3' -59.2 NC_002794.1 + 111640 0.74 0.402276
Target:  5'- cGCCggucggGCGCCGCGGCCg---CGGCc- -3'
miRNA:   3'- -CGGaa----CGCGGUGCCGGacuaGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 114194 0.73 0.439668
Target:  5'- cGCagcgGCGCCACGGCCggcgucuccggCGGCAGc -3'
miRNA:   3'- -CGgaa-CGCGGUGCCGGacua-------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 32255 0.73 0.44492
Target:  5'- aGCUgcugGCGCUcgACGGCCggccGAUCGGCGa -3'
miRNA:   3'- -CGGaa--CGCGG--UGCCGGa---CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 17979 0.72 0.462673
Target:  5'- aGCCUgGCGcCCACGGCCgc--CGGCGa -3'
miRNA:   3'- -CGGAaCGC-GGUGCCGGacuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 110625 0.72 0.480792
Target:  5'- aGCCgcgGCGCCGCGGCggcggGGUCGGg-- -3'
miRNA:   3'- -CGGaa-CGCGGUGCCGga---CUAGCCguc -5'
10760 3' -59.2 NC_002794.1 + 130668 0.72 0.489057
Target:  5'- gGCCgcggGCuccGCCGCGGCCUcGugggaggcgccguGUCGGCAGa -3'
miRNA:   3'- -CGGaa--CG---CGGUGCCGGA-C-------------UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 69735 0.72 0.508595
Target:  5'- cGCCggaGCGCCACGGCCggcGAcgCcGCGGg -3'
miRNA:   3'- -CGGaa-CGCGGUGCCGGa--CUa-GcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 41949 0.71 0.518014
Target:  5'- cGCCcucgGCGUgCGCGGCCUGGaaggUCGGCu- -3'
miRNA:   3'- -CGGaa--CGCG-GUGCCGGACU----AGCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.