miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 141645 0.71 0.527502
Target:  5'- gGCCggcgUG-GCCGCGGCCgc--CGGCGGg -3'
miRNA:   3'- -CGGa---ACgCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 121254 0.71 0.537054
Target:  5'- cGCCgc-CGCCGCGGCC---UCGGCAc -3'
miRNA:   3'- -CGGaacGCGGUGCCGGacuAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 184576 0.7 0.575801
Target:  5'- cGCCgcgGCGgCggcggccacgcGCGGCCgcggGAUCGGCAa -3'
miRNA:   3'- -CGGaa-CGCgG-----------UGCCGGa---CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 72457 0.7 0.575801
Target:  5'- cGCCccGCGCC-CGGCCccg-CGGCGGc -3'
miRNA:   3'- -CGGaaCGCGGuGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 131390 0.7 0.583634
Target:  5'- cGCC--GCGCCcgucaucACGGCCucgcccgUGAUCGGCAc -3'
miRNA:   3'- -CGGaaCGCGG-------UGCCGG-------ACUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 16301 0.7 0.589522
Target:  5'- aGCCUgGCgGCCGCGGCCggcugGAUcccccugccccuggcCGGCAc -3'
miRNA:   3'- -CGGAaCG-CGGUGCCGGa----CUA---------------GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 125330 0.7 0.595421
Target:  5'- aGCCggagcGCGCCACGGCgcac-CGGCAGc -3'
miRNA:   3'- -CGGaa---CGCGGUGCCGgacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 100801 0.7 0.595421
Target:  5'- gGCCgcuucUGCGCCuACGuGCCgGG-CGGCGGg -3'
miRNA:   3'- -CGGa----ACGCGG-UGC-CGGaCUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 41369 0.7 0.605272
Target:  5'- gGCCUUcGCGCuCGCGGCgCcuccuUCGGCGGc -3'
miRNA:   3'- -CGGAA-CGCG-GUGCCG-Gacu--AGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 80437 0.7 0.615142
Target:  5'- cGCCgccgGCgGCCGcCGGCCc-GUCGGCGGc -3'
miRNA:   3'- -CGGaa--CG-CGGU-GCCGGacUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 61159 0.7 0.625023
Target:  5'- cCCgaGCG-CGCGGUCcgGAUCGGCGGc -3'
miRNA:   3'- cGGaaCGCgGUGCCGGa-CUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 131872 0.7 0.625023
Target:  5'- cUCUUggGCGCCGCGGCCUcaucucGGUCGcgcGCGGg -3'
miRNA:   3'- cGGAA--CGCGGUGCCGGA------CUAGC---CGUC- -5'
10760 3' -59.2 NC_002794.1 + 186395 0.7 0.625023
Target:  5'- aGCCgca-GCCGCGGCCgcaccaGUCGGCGu -3'
miRNA:   3'- -CGGaacgCGGUGCCGGac----UAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 107242 0.69 0.63491
Target:  5'- gGCg--GCGUCGCGGaCCUGGccCGGCGGa -3'
miRNA:   3'- -CGgaaCGCGGUGCC-GGACUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 185172 0.69 0.63491
Target:  5'- cGCCggcGCGgCGCGGUCggcgcGGUCGGCGc -3'
miRNA:   3'- -CGGaa-CGCgGUGCCGGa----CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 14652 0.69 0.644794
Target:  5'- cGCCg-GCGCCGCGGCgUcGGUccgacucgCGGCGGc -3'
miRNA:   3'- -CGGaaCGCGGUGCCGgA-CUA--------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 140016 0.69 0.644794
Target:  5'- gGCCgcgGagGCCGCGGCCcccgcGggCGGCGGg -3'
miRNA:   3'- -CGGaa-Cg-CGGUGCCGGa----CuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 94664 0.69 0.644794
Target:  5'- cGCCggcUGUGCC-CGGCCU---UGGCGGa -3'
miRNA:   3'- -CGGa--ACGCGGuGCCGGAcuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 61878 0.69 0.644794
Target:  5'- cGCCgucgucgGCGCCgcGCGGCgaGcgCGGCGa -3'
miRNA:   3'- -CGGaa-----CGCGG--UGCCGgaCuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 75363 0.69 0.644794
Target:  5'- cGCCaccgaccCGCCGCGGCCgg--CGGCGGc -3'
miRNA:   3'- -CGGaac----GCGGUGCCGGacuaGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.