Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 185554 | 0.69 | 0.664528 |
Target: 5'- gGCCgcGCGCCcCGcCCUGccgCGGCAGg -3' miRNA: 3'- -CGGaaCGCGGuGCcGGACua-GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 127346 | 0.69 | 0.671415 |
Target: 5'- uGCCgagacgcucgcggcgGCGgCGCGGCCgcucguGUCGGCGGa -3' miRNA: 3'- -CGGaa-------------CGCgGUGCCGGac----UAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 121003 | 0.68 | 0.693926 |
Target: 5'- ----cGgGCCAUGGCCgagGGUCGGCc- -3' miRNA: 3'- cggaaCgCGGUGCCGGa--CUAGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 188349 | 0.68 | 0.693926 |
Target: 5'- cGCCgucGCGCCcgucCGGCCgg--CGGCGGc -3' miRNA: 3'- -CGGaa-CGCGGu---GCCGGacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 73035 | 0.68 | 0.70267 |
Target: 5'- aGCCU--CGUCcaagACGGCCUGAUCacgcugaacuucuGGCAGg -3' miRNA: 3'- -CGGAacGCGG----UGCCGGACUAG-------------CCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 67559 | 0.68 | 0.703639 |
Target: 5'- gGCC--GCGCCGCaccaaaGCCgaccGGUCGGCGGa -3' miRNA: 3'- -CGGaaCGCGGUGc-----CGGa---CUAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 76836 | 0.68 | 0.703639 |
Target: 5'- gGCCggcgaUGCGCgC-CGGCCUcGUCGGCc- -3' miRNA: 3'- -CGGa----ACGCG-GuGCCGGAcUAGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 139434 | 0.68 | 0.703639 |
Target: 5'- gGUCUcGUGuCCGCGcGCgCcGAUCGGCAGg -3' miRNA: 3'- -CGGAaCGC-GGUGC-CG-GaCUAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 50567 | 0.68 | 0.713297 |
Target: 5'- aGCCUguCGaCACGGCgUGcgCGGCGGc -3' miRNA: 3'- -CGGAacGCgGUGCCGgACuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 78424 | 0.68 | 0.713297 |
Target: 5'- cGCUcccgGCGUCACGGUCg---CGGCGGa -3' miRNA: 3'- -CGGaa--CGCGGUGCCGGacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 145538 | 0.68 | 0.722889 |
Target: 5'- cGCCUcggGCGCCccgaGCGGCCcGAcCGGUu- -3' miRNA: 3'- -CGGAa--CGCGG----UGCCGGaCUaGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 94002 | 0.68 | 0.722889 |
Target: 5'- cGCCg-GCGCCgGCGGCg-GGcCGGCGGg -3' miRNA: 3'- -CGGaaCGCGG-UGCCGgaCUaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 149723 | 0.68 | 0.722889 |
Target: 5'- cGCCUgccuCGCUACGGCgUGccgguggagCGGCGGg -3' miRNA: 3'- -CGGAac--GCGGUGCCGgACua-------GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 95828 | 0.68 | 0.722889 |
Target: 5'- gGCCgggggagcgGCgGCgGCGGCCgggGAggCGGCGGg -3' miRNA: 3'- -CGGaa-------CG-CGgUGCCGGa--CUa-GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 188605 | 0.68 | 0.731461 |
Target: 5'- cGCCUUGCGCCGCaGGUgUGcgaaaacGUCucGCGGa -3' miRNA: 3'- -CGGAACGCGGUG-CCGgAC-------UAGc-CGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 1678 | 0.68 | 0.73241 |
Target: 5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3' miRNA: 3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 1615 | 0.68 | 0.73241 |
Target: 5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3' miRNA: 3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 111873 | 0.68 | 0.73241 |
Target: 5'- gGCCUUGUaGCgCGCGGugaCCUGAUCcagGGCGa -3' miRNA: 3'- -CGGAACG-CG-GUGCC---GGACUAG---CCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 80509 | 0.67 | 0.751198 |
Target: 5'- cGUCUucUGCGCCGCGGCgcgcgacgcCUGGcacCGGCGc -3' miRNA: 3'- -CGGA--ACGCGGUGCCG---------GACUa--GCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 145411 | 0.67 | 0.751198 |
Target: 5'- gGCCUUaaaGCGCgGCGcGCCgccGUCGGCu- -3' miRNA: 3'- -CGGAA---CGCGgUGC-CGGac-UAGCCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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