miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 71097 0.67 0.796314
Target:  5'- aGCCgguCGCCgGCGGCCUGGcCGGagAGg -3'
miRNA:   3'- -CGGaacGCGG-UGCCGGACUaGCCg-UC- -5'
10760 3' -59.2 NC_002794.1 + 131521 0.67 0.795442
Target:  5'- cGCCcgugaucgGCGCCgggcccgucaucACGGCCucgcccgUGGUCGGCGc -3'
miRNA:   3'- -CGGaa------CGCGG------------UGCCGG-------ACUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 148001 0.67 0.787535
Target:  5'- gGCCUUcgucCGCguCGGCCUcGGUCGGUu- -3'
miRNA:   3'- -CGGAAc---GCGguGCCGGA-CUAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 135739 0.67 0.787535
Target:  5'- aCCUgccGCGCCGCGcCCUcgagGAUCaGGCGGu -3'
miRNA:   3'- cGGAa--CGCGGUGCcGGA----CUAG-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 52763 0.67 0.787535
Target:  5'- ----cGCGCCGCGGCCcGggCcGCGGg -3'
miRNA:   3'- cggaaCGCGGUGCCGGaCuaGcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 95772 0.67 0.787535
Target:  5'- gGCCgcgacgGCgGCCGgGGCgaGAggcgCGGCGGa -3'
miRNA:   3'- -CGGaa----CG-CGGUgCCGgaCUa---GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 104403 0.67 0.778627
Target:  5'- gGUCgucCGCCGCGGCCUcGGccUCGGCc- -3'
miRNA:   3'- -CGGaacGCGGUGCCGGA-CU--AGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 152345 0.67 0.769595
Target:  5'- uCCacGCGCUcuACGGCCgcuuggaacgGAUCGGCGa -3'
miRNA:   3'- cGGaaCGCGG--UGCCGGa---------CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 186276 0.67 0.760449
Target:  5'- cGCCUgGCGCgGCGGCaccg-CGGcCAGg -3'
miRNA:   3'- -CGGAaCGCGgUGCCGgacuaGCC-GUC- -5'
10760 3' -59.2 NC_002794.1 + 180604 0.67 0.760449
Target:  5'- uCCUcGCGCCGCgGGCCacGAcaCGGCGGc -3'
miRNA:   3'- cGGAaCGCGGUG-CCGGa-CUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 12196 0.67 0.760449
Target:  5'- gGCCggGCGCCgcucggACGuGCCggcgGcGUCGGCGGc -3'
miRNA:   3'- -CGGaaCGCGG------UGC-CGGa---C-UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 80509 0.67 0.751198
Target:  5'- cGUCUucUGCGCCGCGGCgcgcgacgcCUGGcacCGGCGc -3'
miRNA:   3'- -CGGA--ACGCGGUGCCG---------GACUa--GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 145411 0.67 0.751198
Target:  5'- gGCCUUaaaGCGCgGCGcGCCgccGUCGGCu- -3'
miRNA:   3'- -CGGAA---CGCGgUGC-CGGac-UAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 111873 0.68 0.73241
Target:  5'- gGCCUUGUaGCgCGCGGugaCCUGAUCcagGGCGa -3'
miRNA:   3'- -CGGAACG-CG-GUGCC---GGACUAG---CCGUc -5'
10760 3' -59.2 NC_002794.1 + 1615 0.68 0.73241
Target:  5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3'
miRNA:   3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5'
10760 3' -59.2 NC_002794.1 + 1678 0.68 0.73241
Target:  5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3'
miRNA:   3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5'
10760 3' -59.2 NC_002794.1 + 188605 0.68 0.731461
Target:  5'- cGCCUUGCGCCGCaGGUgUGcgaaaacGUCucGCGGa -3'
miRNA:   3'- -CGGAACGCGGUG-CCGgAC-------UAGc-CGUC- -5'
10760 3' -59.2 NC_002794.1 + 94002 0.68 0.722889
Target:  5'- cGCCg-GCGCCgGCGGCg-GGcCGGCGGg -3'
miRNA:   3'- -CGGaaCGCGG-UGCCGgaCUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 95828 0.68 0.722889
Target:  5'- gGCCgggggagcgGCgGCgGCGGCCgggGAggCGGCGGg -3'
miRNA:   3'- -CGGaa-------CG-CGgUGCCGGa--CUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 145538 0.68 0.722889
Target:  5'- cGCCUcggGCGCCccgaGCGGCCcGAcCGGUu- -3'
miRNA:   3'- -CGGAa--CGCGG----UGCCGGaCUaGCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.