Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 94002 | 0.68 | 0.722889 |
Target: 5'- cGCCg-GCGCCgGCGGCg-GGcCGGCGGg -3' miRNA: 3'- -CGGaaCGCGG-UGCCGgaCUaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 50567 | 0.68 | 0.713297 |
Target: 5'- aGCCUguCGaCACGGCgUGcgCGGCGGc -3' miRNA: 3'- -CGGAacGCgGUGCCGgACuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 78424 | 0.68 | 0.713297 |
Target: 5'- cGCUcccgGCGUCACGGUCg---CGGCGGa -3' miRNA: 3'- -CGGaa--CGCGGUGCCGGacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 139434 | 0.68 | 0.703639 |
Target: 5'- gGUCUcGUGuCCGCGcGCgCcGAUCGGCAGg -3' miRNA: 3'- -CGGAaCGC-GGUGC-CG-GaCUAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 76836 | 0.68 | 0.703639 |
Target: 5'- gGCCggcgaUGCGCgC-CGGCCUcGUCGGCc- -3' miRNA: 3'- -CGGa----ACGCG-GuGCCGGAcUAGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 67559 | 0.68 | 0.703639 |
Target: 5'- gGCC--GCGCCGCaccaaaGCCgaccGGUCGGCGGa -3' miRNA: 3'- -CGGaaCGCGGUGc-----CGGa---CUAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 73035 | 0.68 | 0.70267 |
Target: 5'- aGCCU--CGUCcaagACGGCCUGAUCacgcugaacuucuGGCAGg -3' miRNA: 3'- -CGGAacGCGG----UGCCGGACUAG-------------CCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 188349 | 0.68 | 0.693926 |
Target: 5'- cGCCgucGCGCCcgucCGGCCgg--CGGCGGc -3' miRNA: 3'- -CGGaa-CGCGGu---GCCGGacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 121003 | 0.68 | 0.693926 |
Target: 5'- ----cGgGCCAUGGCCgagGGUCGGCc- -3' miRNA: 3'- cggaaCgCGGUGCCGGa--CUAGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 127346 | 0.69 | 0.671415 |
Target: 5'- uGCCgagacgcucgcggcgGCGgCGCGGCCgcucguGUCGGCGGa -3' miRNA: 3'- -CGGaa-------------CGCgGUGCCGGac----UAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 185554 | 0.69 | 0.664528 |
Target: 5'- gGCCgcGCGCCcCGcCCUGccgCGGCAGg -3' miRNA: 3'- -CGGaaCGCGGuGCcGGACua-GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 140016 | 0.69 | 0.644794 |
Target: 5'- gGCCgcgGagGCCGCGGCCcccgcGggCGGCGGg -3' miRNA: 3'- -CGGaa-Cg-CGGUGCCGGa----CuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 94664 | 0.69 | 0.644794 |
Target: 5'- cGCCggcUGUGCC-CGGCCU---UGGCGGa -3' miRNA: 3'- -CGGa--ACGCGGuGCCGGAcuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 14652 | 0.69 | 0.644794 |
Target: 5'- cGCCg-GCGCCGCGGCgUcGGUccgacucgCGGCGGc -3' miRNA: 3'- -CGGaaCGCGGUGCCGgA-CUA--------GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 61878 | 0.69 | 0.644794 |
Target: 5'- cGCCgucgucgGCGCCgcGCGGCgaGcgCGGCGa -3' miRNA: 3'- -CGGaa-----CGCGG--UGCCGgaCuaGCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 75363 | 0.69 | 0.644794 |
Target: 5'- cGCCaccgaccCGCCGCGGCCgg--CGGCGGc -3' miRNA: 3'- -CGGaac----GCGGUGCCGGacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 185172 | 0.69 | 0.63491 |
Target: 5'- cGCCggcGCGgCGCGGUCggcgcGGUCGGCGc -3' miRNA: 3'- -CGGaa-CGCgGUGCCGGa----CUAGCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 107242 | 0.69 | 0.63491 |
Target: 5'- gGCg--GCGUCGCGGaCCUGGccCGGCGGa -3' miRNA: 3'- -CGgaaCGCGGUGCC-GGACUa-GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 131872 | 0.7 | 0.625023 |
Target: 5'- cUCUUggGCGCCGCGGCCUcaucucGGUCGcgcGCGGg -3' miRNA: 3'- cGGAA--CGCGGUGCCGGA------CUAGC---CGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 186395 | 0.7 | 0.625023 |
Target: 5'- aGCCgca-GCCGCGGCCgcaccaGUCGGCGu -3' miRNA: 3'- -CGGaacgCGGUGCCGGac----UAGCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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