miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 61159 0.7 0.625023
Target:  5'- cCCgaGCG-CGCGGUCcgGAUCGGCGGc -3'
miRNA:   3'- cGGaaCGCgGUGCCGGa-CUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 80437 0.7 0.615142
Target:  5'- cGCCgccgGCgGCCGcCGGCCc-GUCGGCGGc -3'
miRNA:   3'- -CGGaa--CG-CGGU-GCCGGacUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 41369 0.7 0.605272
Target:  5'- gGCCUUcGCGCuCGCGGCgCcuccuUCGGCGGc -3'
miRNA:   3'- -CGGAA-CGCG-GUGCCG-Gacu--AGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 100801 0.7 0.595421
Target:  5'- gGCCgcuucUGCGCCuACGuGCCgGG-CGGCGGg -3'
miRNA:   3'- -CGGa----ACGCGG-UGC-CGGaCUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 125330 0.7 0.595421
Target:  5'- aGCCggagcGCGCCACGGCgcac-CGGCAGc -3'
miRNA:   3'- -CGGaa---CGCGGUGCCGgacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 16301 0.7 0.589522
Target:  5'- aGCCUgGCgGCCGCGGCCggcugGAUcccccugccccuggcCGGCAc -3'
miRNA:   3'- -CGGAaCG-CGGUGCCGGa----CUA---------------GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 131390 0.7 0.583634
Target:  5'- cGCC--GCGCCcgucaucACGGCCucgcccgUGAUCGGCAc -3'
miRNA:   3'- -CGGaaCGCGG-------UGCCGG-------ACUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 72457 0.7 0.575801
Target:  5'- cGCCccGCGCC-CGGCCccg-CGGCGGc -3'
miRNA:   3'- -CGGaaCGCGGuGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 184576 0.7 0.575801
Target:  5'- cGCCgcgGCGgCggcggccacgcGCGGCCgcggGAUCGGCAa -3'
miRNA:   3'- -CGGaa-CGCgG-----------UGCCGGa---CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 121254 0.71 0.537054
Target:  5'- cGCCgc-CGCCGCGGCC---UCGGCAc -3'
miRNA:   3'- -CGGaacGCGGUGCCGGacuAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 141645 0.71 0.527502
Target:  5'- gGCCggcgUG-GCCGCGGCCgc--CGGCGGg -3'
miRNA:   3'- -CGGa---ACgCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 41949 0.71 0.518014
Target:  5'- cGCCcucgGCGUgCGCGGCCUGGaaggUCGGCu- -3'
miRNA:   3'- -CGGaa--CGCG-GUGCCGGACU----AGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 69735 0.72 0.508595
Target:  5'- cGCCggaGCGCCACGGCCggcGAcgCcGCGGg -3'
miRNA:   3'- -CGGaa-CGCGGUGCCGGa--CUa-GcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 130668 0.72 0.489057
Target:  5'- gGCCgcggGCuccGCCGCGGCCUcGugggaggcgccguGUCGGCAGa -3'
miRNA:   3'- -CGGaa--CG---CGGUGCCGGA-C-------------UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 110625 0.72 0.480792
Target:  5'- aGCCgcgGCGCCGCGGCggcggGGUCGGg-- -3'
miRNA:   3'- -CGGaa-CGCGGUGCCGga---CUAGCCguc -5'
10760 3' -59.2 NC_002794.1 + 17979 0.72 0.462673
Target:  5'- aGCCUgGCGcCCACGGCCgc--CGGCGa -3'
miRNA:   3'- -CGGAaCGC-GGUGCCGGacuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 32255 0.73 0.44492
Target:  5'- aGCUgcugGCGCUcgACGGCCggccGAUCGGCGa -3'
miRNA:   3'- -CGGaa--CGCGG--UGCCGGa---CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 114194 0.73 0.439668
Target:  5'- cGCagcgGCGCCACGGCCggcgucuccggCGGCAGc -3'
miRNA:   3'- -CGgaa-CGCGGUGCCGGacua-------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 123568 0.74 0.402276
Target:  5'- cGCCUUcgaGCGCCACGGCCgccgccCGuGCAGc -3'
miRNA:   3'- -CGGAA---CGCGGUGCCGGacua--GC-CGUC- -5'
10760 3' -59.2 NC_002794.1 + 111640 0.74 0.402276
Target:  5'- cGCCggucggGCGCCGCGGCCg---CGGCc- -3'
miRNA:   3'- -CGGaa----CGCGGUGCCGGacuaGCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.