miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 1615 0.68 0.73241
Target:  5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3'
miRNA:   3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5'
10760 3' -59.2 NC_002794.1 + 1678 0.68 0.73241
Target:  5'- uCCgagGCGCCcacCGGCCUGAUaCGGgGa -3'
miRNA:   3'- cGGaa-CGCGGu--GCCGGACUA-GCCgUc -5'
10760 3' -59.2 NC_002794.1 + 12196 0.67 0.760449
Target:  5'- gGCCggGCGCCgcucggACGuGCCggcgGcGUCGGCGGc -3'
miRNA:   3'- -CGGaaCGCGG------UGC-CGGa---C-UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 14652 0.69 0.644794
Target:  5'- cGCCg-GCGCCGCGGCgUcGGUccgacucgCGGCGGc -3'
miRNA:   3'- -CGGaaCGCGGUGCCGgA-CUA--------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 16301 0.7 0.589522
Target:  5'- aGCCUgGCgGCCGCGGCCggcugGAUcccccugccccuggcCGGCAc -3'
miRNA:   3'- -CGGAaCG-CGGUGCCGGa----CUA---------------GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 17979 0.72 0.462673
Target:  5'- aGCCUgGCGcCCACGGCCgc--CGGCGa -3'
miRNA:   3'- -CGGAaCGC-GGUGCCGGacuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 21884 0.76 0.304325
Target:  5'- gGCCgcgggGUGuCCGCGGCCUGcGUCGGUGGu -3'
miRNA:   3'- -CGGaa---CGC-GGUGCCGGAC-UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 32255 0.73 0.44492
Target:  5'- aGCUgcugGCGCUcgACGGCCggccGAUCGGCGa -3'
miRNA:   3'- -CGGaa--CGCGG--UGCCGGa---CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 32595 0.66 0.837979
Target:  5'- gGCCggggccgGgGCCGgGGCCgggGAUCGGg-- -3'
miRNA:   3'- -CGGaa-----CgCGGUgCCGGa--CUAGCCguc -5'
10760 3' -59.2 NC_002794.1 + 41235 0.66 0.837979
Target:  5'- uCCUcccaCGCCGCGGCCgccGAcgcCGGCGGc -3'
miRNA:   3'- cGGAac--GCGGUGCCGGa--CUa--GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 41369 0.7 0.605272
Target:  5'- gGCCUUcGCGCuCGCGGCgCcuccuUCGGCGGc -3'
miRNA:   3'- -CGGAA-CGCG-GUGCCG-Gacu--AGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 41949 0.71 0.518014
Target:  5'- cGCCcucgGCGUgCGCGGCCUGGaaggUCGGCu- -3'
miRNA:   3'- -CGGaa--CGCG-GUGCCGGACU----AGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 48044 0.66 0.813448
Target:  5'- cGCCgagUGCGUgcugggCACGGCgCUGAUggcCGGcCAGc -3'
miRNA:   3'- -CGGa--ACGCG------GUGCCG-GACUA---GCC-GUC- -5'
10760 3' -59.2 NC_002794.1 + 48178 0.66 0.826715
Target:  5'- cGCCgcugcagcggaacUGCGCCaACGGCCggccuucgaGGUagaGGCAGa -3'
miRNA:   3'- -CGGa------------ACGCGG-UGCCGGa--------CUAg--CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 49016 0.66 0.837979
Target:  5'- cGCCgcgGCgGCCGCGGCgUcGUcCGGCGc -3'
miRNA:   3'- -CGGaa-CG-CGGUGCCGgAcUA-GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 50567 0.68 0.713297
Target:  5'- aGCCUguCGaCACGGCgUGcgCGGCGGc -3'
miRNA:   3'- -CGGAacGCgGUGCCGgACuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 52763 0.67 0.787535
Target:  5'- ----cGCGCCGCGGCCcGggCcGCGGg -3'
miRNA:   3'- cggaaCGCGGUGCCGGaCuaGcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 56586 0.66 0.833193
Target:  5'- cGCCgcgGCGCCcgccgcCGGCCUccucauggagaacugGAcggCGGCGGa -3'
miRNA:   3'- -CGGaa-CGCGGu-----GCCGGA---------------CUa--GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 57410 0.66 0.829967
Target:  5'- cGCCc-GCGUgGcCGGCgugCUGGUCGGCAc -3'
miRNA:   3'- -CGGaaCGCGgU-GCCG---GACUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 61159 0.7 0.625023
Target:  5'- cCCgaGCG-CGCGGUCcgGAUCGGCGGc -3'
miRNA:   3'- cGGaaCGCgGUGCCGGa-CUAGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.